Assessing model adequacy leads to more robust phylogeographic inference
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Updated: Oct 6, 2025

A Practical Guide to Phylogenetics for Nonexperts
Published on: February 5, 2014
Bryan C Carstens1, Megan L Smith2, Drew J Duckett1
1Department of Evolution, Ecology, and Organismal Biology at The Ohio State University, Columbus, OH, USA.
Abstract:
Phylogeographic studies base inferences on large data sets and complex demographic models, but these models are applied in ways that could mislead researchers and compromise their inference. Researchers face three challenges associated with the use of models: (i) 'model selection', or the identification of an appropriate model for analysis; (ii) 'evaluation of analytical results', or the interpretation of the biological significance of the resulting parameter estimates, delimitations, and topologies; and (iii) 'model evaluation', or the use of statistical approaches to assess the fit of the model to the data. The field collectively invests most of its energy in point (ii) without considering the other points; we argue that attention to points (i) and (iii) is essential to phylogeographic inference.
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