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Updated: Oct 6, 2025

Experimental Melanoma Immunotherapy Model Using Tumor Vaccination with a Hematopoietic Cytokine
Published on: February 24, 2023
T cell characteristics associated with toxicity to immune checkpoint blockade in patients with melanoma
Alexander X Lozano1,2, Aadel A Chaudhuri3,4,5,6, Aishwarya Nene7
1Department of Materials Science and Engineering, Stanford University, Stanford, CA, USA.
Abstract:
Severe immune-related adverse events (irAEs) occur in up to 60% of patients with melanoma treated with immune checkpoint inhibitors (ICIs). However, it is unknown whether a common baseline immunological state precedes irAE development. Here we applied mass cytometry by time of flight, single-cell RNA sequencing, single-cell V(D)J sequencing, bulk RNA sequencing and bulk T cell receptor (TCR) sequencing to study peripheral blood samples from patients with melanoma treated with anti-PD-1 monotherapy or anti-PD-1 and anti-CTLA-4 combination ICIs. By analyzing 93 pre- and early on-ICI blood samples and 3 patient cohorts (n = 27, 26 and 18), we found that 2 pretreatment factors in circulation-activated CD4 memory T cell abundance and TCR diversity-are associated with severe irAE development regardless of organ system involvement. We also explored on-treatment changes in TCR clonality among patients receiving combination therapy and linked our findings to the severity and timing of irAE onset. These results demonstrate circulating T cell characteristics associated with ICI-induced toxicity, with implications for improved diagnostics and clinical management.
Insights
Pre-treatment T cell factors, including activated CD4 memory T cell abundance and T cell receptor (TCR) diversity, predict severe immune-related adverse events (irAEs) in melanoma patients receiving immune checkpoint inhibitors (ICIs). These findings aid in predicting and managing ICI toxicity.
Area of Science:
- Immunology
- Oncology
- Genomics
Background:
- Severe immune-related adverse events (irAEs) affect up to 60% of melanoma patients treated with immune checkpoint inhibitors (ICIs).
- The underlying immunological predictors of irAE development remain largely unknown.
- Understanding these predictors is crucial for managing ICI-induced toxicity.
Purpose of the Study:
- To identify baseline immunological factors in peripheral blood associated with severe irAE development in melanoma patients undergoing ICI therapy.
- To explore the relationship between T cell receptor (TCR) clonality and irAEs during combination ICI treatment.
Main Methods:
- Mass cytometry by time of flight, single-cell RNA sequencing, single-cell V(D)J sequencing, bulk RNA sequencing, and bulk TCR sequencing were employed.
- Analysis of 93 pre- and early on-ICI peripheral blood samples from three patient cohorts (n=27, 26, 18).
- Investigated circulating T cell characteristics and TCR diversity.
Main Results:
- Two pretreatment factors—activated CD4 memory T cell abundance and TCR diversity—were significantly associated with severe irAE development.
- These associations were independent of the specific organ system affected by irAEs.
- On-treatment TCR clonality changes were explored in relation to irAE severity and timing.
Conclusions:
- Circulating T cell characteristics at baseline can predict the development of severe irAEs in patients treated with ICIs.
- These findings have implications for improved diagnostics and clinical management of ICI-induced toxicity.
- Further research can leverage these biomarkers for personalized treatment strategies.
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