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Updated: Oct 6, 2025

Lipidomics and Transcriptomics in Neurological Diseases
Published on: March 18, 2022
Antisense Oligonucleotide-Related Macrovesicular Vacuolation of Hippocampal Neurons in Nonhuman Primates
Martin Lamb1, Jeffery A Engelhardt2, Branka Grubor1
1Biogen, Cambridge, MA, USA.
Abstract:
2'-methoxyethyl (MOE) antisense oligonucleotides (ASOs) tested in multidose intrathecal nonhuman primate (NHP) toxicity studies have consistently revealed the presence of single large vacuoles in pyramidal neurons of the hippocampus in the absence of any cellular response. Termed "macrovesicular," these vacuoles were characterized by immunohistochemistry and transmission electron microscopy which showed that these vacuoles are dilated lysosomes in neurons containing accumulated ASO. Additionally, two NHP studies were conducted to investigate the role of tissue fixation on their histogenesis. In Fixation Study 1, 6 doses of 5 mg 2'-MOE ASO with a full phosphorothioate backbone were administered by lumbar puncture over 5 weeks; in Fixation Study 2, 5 doses of 35 mg 2'-MOE ASO with a mixed phosphorothioate/phosphodiester backbone were administered over 12 weeks. At necropsy in each study, brain slices were either immersion fixed in neutral buffered 10% formalin or Carnoy's fixative; frozen at -80 °C; or perfusion fixed with modified Karnovsky's fixative. Fixed samples were processed to paraffin, sectioned, and stained with hematoxylin and eosin (H&E) and compared with H&E cryosections prepared from the frozen tissue of the same brain. The presence of vacuoles in fixed brain tissue but never in fresh frozen tissue showed that they arose during postmortem tissue fixation, and as such represent a processing artifact that is not relevant to human safety assessment of intrathecally administered 2'-MOE ASOs.
Insights
Vacuoles observed in nonhuman primate brain tissue after 2'-methoxyethyl (MOE) antisense oligonucleotide (ASO) administration are processing artifacts. These macrovesicular structures, identified as dilated lysosomes, arise during postmortem tissue fixation, not in fresh tissue, and are irrelevant for human safety assessments.
Area of Science:
- Neuroscience
- Toxicology
- Pharmacology
Background:
- 2 -methoxyethyl (MOE) antisense oligonucleotides (ASOs) are used in intrathecal toxicity studies.
- Vacuoles, termed "macrovesicular," have been observed in hippocampal pyramidal neurons in nonhuman primates (NHPs) treated with MOE ASOs.
Purpose of the Study:
- To investigate the histogenesis of macrovesicular vacuoles observed in NHP brain tissue.
- To determine if these vacuoles represent a true toxicological finding or a processing artifact.
Main Methods:
- Two nonhuman primate studies involving intrathecal administration of 2 -MOE ASOs with different backbones.
- Brain tissue fixation using formalin, Carnoy's fixative, or modified Karnovsky's fixative, alongside fresh frozen tissue controls.
- Histological analysis using hematoxylin and eosin (H&E) staining and comparison between fixed and fresh frozen samples.
Main Results:
- Macrovesicular vacuoles were present in fixed brain tissue but absent in fresh frozen tissue.
- Immunohistochemistry and transmission electron microscopy revealed these vacuoles as dilated lysosomes containing accumulated ASO.
- The presence of vacuoles was dependent on postmortem tissue fixation methods.
Conclusions:
- The observed macrovesicular vacuoles are artifacts of postmortem tissue fixation.
- These vacuoles do not represent a biologically relevant finding for the safety assessment of intrathecally administered 2 -MOE ASOs.
- Standard histological processing can induce artifactual vacuoles in neuronal lysosomes.

