Related Experiment Video
Updated: Oct 5, 2025

Author Spotlight: Finding New Therapeutic Targets for Malignant Peripheral Nerve Sheath Tumor Through Genome-Scale shRNA Screens
Published on: August 25, 2023
GPNMB expression identifies TSC1/2/mTOR-associated and MiT family translocation-driven renal neoplasms
Daniela C Salles1, Kaushal Asrani1, Juhyung Woo1
1Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Abstract:
GPNMB (glycoprotein nonmetastatic B) and other TFE3/TFEB transcriptional targets have been proposed as markers for microphthalmia (MiT) translocation renal cell carcinomas (tRCCs). We recently demonstrated that constitutive mTORC1 activation via TSC1/2 loss leads to increased activity of TFE3/TFEB, suggesting that the pathogenesis and molecular markers for tRCCs and TSC1/2-associated tumors may be overlapping. We examined GPNMB expression in human kidney and angiomyolipoma (AML) cell lines with TSC2 and/or TFE3/TFEB loss produced using CRISPR-Cas9 genome editing as well as in a mouse model of Tsc2 inactivation-driven renal tumorigenesis. Using an automated immunohistochemistry (IHC) assay for GPNMB, digital image analysis was employed to quantitatively score expression in clear cell RCC (ccRCC, n = 87), papillary RCC (papRCC, n = 53), chromophobe RCC (chRCC, n = 34), oncocytoma (n = 4), TFE3- or TFEB-driven tRCC (n = 56), eosinophilic solid and cystic RCC (ESC, n = 6), eosinophilic vacuolated tumor (EVT, n = 4), and low-grade oncocytic tumor (LOT, n = 3), as well as AML (n = 29) and perivascular epithelioid cell tumors (PEComas, n = 8). In cell lines, GPNMB was upregulated following TSC2 loss in a MiT/TFE- and mTORC1-dependent fashion. Renal tumors in Tsc2+/- A/J mice showed upregulation of GPNMB compared with normal kidney. Mean GPNMB expression was significantly higher in tRCC than in ccRCC (p < 0.0001), papRCC (p < 0.0001), and chRCC (p < 0.0001). GPNMB expression in TSC1/2/MTOR alteration-associated renal tumors (including ESC, LOT, AML, and PEComa) was comparable to that in tRCC. The immunophenotype of tRCC and TSC1/2/MTOR alteration-associated renal tumors is highly overlapping, likely due to the increased activity of TFE3/TFEB in both, revealing an important caveat regarding the use of TFE3/TFEB-transcriptional targets as diagnostic markers. © 2022 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.
Insights
Glycoprotein nonmetastatic B (GPNMB) is upregulated in TFE3/TFEB-driven tumors and TSC1/2-associated renal tumors. This overlap challenges GPNMB
Area of Science:
- Nephrology
- Oncology
- Molecular Biology
Background:
- Glycoprotein nonmetastatic B (GPNMB) and TFE3/TFEB targets are potential markers for microphthalmia (MiT) translocation renal cell carcinomas (tRCCs).
- Constitutive mTORC1 activation via TSC1/2 loss increases TFE3/TFEB activity, suggesting overlapping pathogenesis and markers between tRCCs and TSC1/2-associated tumors.
Purpose of the Study:
- To investigate GPNMB expression in various human and mouse kidney tumor models with TSC2 and/or TFE3/TFEB alterations.
- To assess the diagnostic utility of GPNMB as a marker for tRCCs and related tumors.
Main Methods:
- CRISPR-Cas9 genome editing was used to create kidney and angiomyolipoma (AML) cell lines with TSC2 and/or TFE3/TFEB loss.
- An automated immunohistochemistry (IHC) assay and digital image analysis quantified GPNMB expression in diverse renal tumor subtypes and AMLs.
- GPNMB expression was analyzed in a mouse model of Tsc2 inactivation-driven renal tumorigenesis.
Main Results:
- GPNMB was upregulated in cell lines with TSC2 loss, dependent on MiT/TFE and mTORC1.
- Renal tumors in Tsc2+/- mice showed increased GPNMB expression compared to normal kidney.
- Mean GPNMB expression was significantly higher in tRCCs than in clear cell, papillary, and chromophobe RCCs.
- GPNMB expression in TSC1/2/mTOR-altered tumors (including AMLs) was comparable to tRCCs.
Conclusions:
- The immunophenotype of tRCCs and TSC1/2/mTOR-altered renal tumors significantly overlaps.
- This overlap is likely due to increased TFE3/TFEB activity in both tumor types.
- The findings reveal a critical caveat regarding the use of TFE3/TFEB transcriptional targets as standalone diagnostic markers for tRCCs.
More Related Videos
09:37Defining Gene Functions in Tumorigenesis by Ex vivo Ablation of Floxed Alleles in Malignant Peripheral Nerve Sheath Tumor Cells
Published on: August 25, 2021
08:57Author Spotlight: Genetically Engineered Mouse Models and Pathological Characterization of Neurofibromatosis Type 1 Associated Tumors
Published on: May 17, 2024
Related Concept Videos
mTOR Signaling and Cancer Progression
The mTOR pathway or the...
The Retinoblastoma Gene
The first-ever tumor suppressor gene called Rb was identified in retinoblastoma - a rare eye tumor in children. In inherited forms of the disease, a child inherits one defective copy of the Rb gene, which predisposes them to retinoblastoma. However,...
PI3K/mTOR/AKT Signaling Pathway
The Ras Gene
Ras is a...
Cancer-Critical Genes I: Proto-oncogenes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Abnormal Proliferation