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Updated: Oct 4, 2025

Method to Visualize and Analyze Membrane Interacting Proteins by Transmission Electron Microscopy
Published on: March 5, 2017
Structure of the Mon1-Ccz1 complex reveals molecular basis of membrane binding for Rab7 activation
Björn U Klink1, Eric Herrmann2, Claudia Antoni1
1Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, 44227 Dortmund, Germany.
Abstract:
Activation of the GTPase Rab7/Ypt7 by its cognate guanine nucleotide exchange factor (GEF) Mon1-Ccz1 marks organelles such as endosomes and autophagosomes for fusion with lysosomes/vacuoles and degradation of their content. Here, we present a high-resolution cryogenic electron microscopy structure of the Mon1-Ccz1 complex that reveals its architecture in atomic detail. Mon1 and Ccz1 are arranged side by side in a pseudo-twofold symmetrical heterodimer. The three Longin domains of each Mon1 and Ccz1 are triangularly arranged, providing a strong scaffold for the catalytic center of the GEF. At the opposite side of the Ypt7-binding site, a positively charged and relatively flat patch stretches the Longin domains 2/3 of Mon1 and functions as a phosphatidylinositol phosphate-binding site, explaining how the GEF is targeted to membranes. Our work provides molecular insight into the mechanisms of endosomal Rab activation and serves as a blueprint for understanding the function of members of the Tri Longin domain Rab-GEF family.
Insights
The Mon1-Ccz1 complex structure reveals how it activates Rab7/Ypt7 GTPase, marking organelles for lysosomal fusion and degradation. This provides insight into membrane targeting and the Tri Longin domain Rab-GEF family.
Area of Science:
- Cell Biology
- Structural Biology
- Molecular Mechanisms
Background:
- Rab GTPases regulate organelle trafficking and fusion.
- The Mon1-Ccz1 complex is a guanine nucleotide exchange factor (GEF) for Rab7/Ypt7.
- Rab7/Ypt7 activation is crucial for endosomal and autophagosomal fusion with lysosomes/vacuoles.
Purpose of the Study:
- To determine the high-resolution structure of the Mon1-Ccz1 complex.
- To elucidate the molecular architecture and mechanism of Rab7/Ypt7 activation by Mon1-Ccz1.
- To understand the membrane-targeting mechanism of the GEF.
Main Methods:
- High-resolution cryogenic electron microscopy (cryo-EM).
- Structural analysis of the Mon1-Ccz1 heterodimer.
Main Results:
- Atomic-level structure of the Mon1-Ccz1 complex.
- Mon1 and Ccz1 form a pseudo-twofold symmetrical heterodimer.
- Triangular arrangement of Longin domains forms a scaffold for the catalytic center.
- A phosphatidylinositol phosphate-binding site on Mon1 explains membrane targeting.
Conclusions:
- The structure provides molecular insight into endosomal Rab activation.
- The findings reveal the mechanism of GEF-mediated organelle fusion.
- This work serves as a blueprint for understanding Tri Longin domain Rab-GEF family functions.
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