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Updated: Oct 4, 2025

Experimental Human Pneumococcal Carriage
Published on: February 15, 2013
Infant Pneumococcal Carriage in Belgium Not Affected by COVID-19 Containment Measures
Laura Willen1, Esra Ekinci1, Lize Cuypers2
1Centre for the Evaluation of Vaccination, Vaccine and Infectious Disease Institute, University of Antwerp, Wilrijk, Belgium.
Insights
COVID-19 measures reduced invasive pneumococcal disease but not nasopharyngeal carriage. This study challenges the link between social distancing and reduced bacterial transmission, highlighting the nasopharyngeal microbiome.
Area of Science:
- Microbiology
- Epidemiology
- Public Health
Background:
- Streptococcus pneumoniae causes invasive diseases like pneumonia, meningitis, and sepsis, particularly in vulnerable populations.
- The COVID-19 pandemic saw a decrease in invasive bacterial respiratory infections, coinciding with restrictive measures.
- It was hypothesized that measures to curb SARS-CoV-2 spread also reduced transmission of other respiratory pathogens.
Purpose of the Study:
- To investigate the impact of COVID-19 containment measures on Streptococcus pneumoniae carriage rates.
- To re-evaluate the relationship between nasopharyngeal colonization and invasive pneumococcal disease.
- To explore the role of the nasopharyngeal microbiome in pneumococcal dynamics.
Main Methods:
- Yearly nasopharyngeal carriage study in healthy children attending daycare centers.
- Analysis of pneumococcal carriage rates during periods of stringent COVID-19 restrictive measures.
- Comparison of carriage data with trends in invasive pneumococcal disease.
Main Results:
- A sustained and high rate of pneumococcal carriage was observed in children despite stringent COVID-19 containment measures.
- This finding contradicts the assumption that reduced person-to-person contact directly lowers nasopharyngeal bacterial carriage.
- The study suggests that factors beyond social distancing influence pneumococcal colonization.
Conclusions:
- The link between restrictive measures and reduced transmission of respiratory bacteria like Streptococcus pneumoniae requires further investigation.
- Nasopharyngeal carriage rates remained high, suggesting resilience or alternative transmission pathways.
- Further research into the nasopharyngeal microbiome is warranted to understand colonization and invasion dynamics.
Abstract:
Streptococcus pneumoniae is an important and frequently carried respiratory pathogen that has the potential to cause serious invasive diseases, such as pneumonia, meningitis, and sepsis. Young children and older adults are among the most vulnerable to developing serious disease. With the arrival of the COVID-19 pandemic and the concomitant restrictive measures, invasive disease cases caused by respiratory bacterial species, including pneumococci, decreased substantially. Notably, the stringency of the containment measures as well as the visible reduction in the movement of people appeared to coincide with the drop in invasive disease cases. One could argue that wearing protective masks and adhering to social distancing guidelines to halt the spread of the SARS-CoV-2 virus, also led to a reduction in the person-to-person transmission of respiratory bacterial species. Although plausible, this conjecture is challenged by novel data obtained from our nasopharyngeal carriage study which is performed yearly in healthy daycare center attending children. A sustained and high pneumococcal carriage rate was observed amid periods of stringent restrictive measures. This finding prompts us to revisit the connection between nasopharyngeal colonization and invasion and invites us to look closer at the nasopharyngeal microbiome as a whole.
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