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Updated: Oct 4, 2025

Identifying PD-1/PD-L1 Inhibitors with Surface Plasmon Resonance Technology
Published on: May 2, 2025
A pan-cancer study of PD-1 and CTLA-4 as therapeutic targets
Zongqiang Cai1, Xiaojie Ang1, Zekun Xu1
1Department of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.
Background:
Immunotherapy is a new and powerful weapon against tumors, represented by inhibitors of programmed death-1 (PD-1) and cytotoxic T lymphocyte-associated protein-4 (CTLA-4). This study aimed to determine the similarities and differences between PD-1 and CTLA-4 in 33 cancers in The Cancer Genome Atlas (TCGA) and the impact of subtypes of the immune environment on tumor production and treatment.
Methods:
From the Xena browser, we downloaded TNM stage, immune subtypes, and tumor microenvironment scores for 33 tumors from TCGA. Expression of CTLA-4 and PD-1 in normal and tumor samples were compared for various tumors with normal tissue sample sizes greater than five. The relationship between expression and overall survival was investigated using one-way Cox analysis. The immune scores of 33 tumors were assessed using ESTIMATE prediction software to predict the degree of immune cell infiltration across tumors and calculate the correlation between PD-1 and CTLA-4 expression with the tumor microenvironment and tumor stem cells. We also examined the correlation between genes and drug sensitivity.
Results:
PD-1 and CTLA-4 were highly expressed in breast invasive carcinoma (BRCA), cholangiocarcinoma (CHOL), esophageal carcinoma (ESCA), and kidney renal clear cell carcinoma (KIRC) (P<0.05), highly correlated with immune subtypes C2 (IFN-γ-dominant) and C6 (TGF-β-dominant), and positively correlated with tumor microenvironmental immune scores (P<0.05). In renal clear cell carcinoma, PD-1 and CTLA-4 expression was positively correlated with clinical stage and microenvironmental score (r>0.7, P<0.05).
Conclusions:
The finding that PD1 and CTLA-4 are associated with the prognosis of most tumour patients and are closely related to the tumour microenvironment is of great value and provides a research direction for the screening of populations benefiting from immunotherapy.
Insights
Programmed death-1 (PD-1) and cytotoxic T lymphocyte-associated protein-4 (CTLA-4) are key immunotherapy targets. This study analyzed their expression and correlation with tumor microenvironment in 33 cancers, revealing prognostic value and potential for immunotherapy patient selection.
Area of Science:
- Oncology
- Immunology
- Genomics
Background:
- Immunotherapy, utilizing inhibitors of programmed death-1 (PD-1) and cytotoxic T lymphocyte-associated protein-4 (CTLA-4), represents a significant advancement in cancer treatment.
- Understanding the similarities and differences between PD-1 and CTLA-4 across various cancer types is crucial for optimizing therapeutic strategies.
Purpose of the Study:
- To investigate the expression patterns of PD-1 and CTLA-4 in 33 distinct cancer types within The Cancer Genome Atlas (TCGA) database.
- To explore the relationship between PD-1 and CTLA-4 expression, immune microenvironment subtypes, and overall patient survival.
- To assess the correlation between these immune checkpoint molecules, tumor microenvironment characteristics, and potential drug sensitivity.
Main Methods:
- Downloaded TNM stage, immune subtype, and tumor microenvironment data for 33 TCGA tumors.
- Compared PD-1 and CTLA-4 expression in normal versus tumor tissues.
- Utilized Cox analysis to assess the association between expression and overall survival.
- Employed ESTIMATE software to evaluate immune cell infiltration and correlate PD-1/CTLA-4 expression with the tumor microenvironment and stemness, alongside gene-drug sensitivity analysis.
Main Results:
- PD-1 and CTLA-4 exhibited high expression in specific cancers including breast invasive carcinoma (BRCA), cholangiocarcinoma (CHOL), esophageal carcinoma (ESCA), and kidney renal clear cell carcinoma (KIRC).
- Expression levels were significantly correlated with immune subtypes C2 (IFN-γ-dominant) and C6 (TGF-β-dominant), and positively associated with tumor microenvironmental immune scores.
- In kidney renal clear cell carcinoma, PD-1 and CTLA-4 expression strongly correlated with advanced clinical stage and a higher microenvironmental score.
Conclusions:
- PD-1 and CTLA-4 expression are linked to patient prognosis across a majority of tumors studied.
- These immune checkpoint molecules demonstrate a significant association with the tumor microenvironment.
- The findings provide valuable insights for identifying patient populations likely to benefit from immunotherapy and guide future research directions.
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