A pan-cancer study of PD-1 and CTLA-4 as therapeutic targets

Zongqiang Cai1, Xiaojie Ang1, Zekun Xu1

  • 1Department of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.

Abstract

Insights

Programmed death-1 (PD-1) and cytotoxic T lymphocyte-associated protein-4 (CTLA-4) are key immunotherapy targets. This study analyzed their expression and correlation with tumor microenvironment in 33 cancers, revealing prognostic value and potential for immunotherapy patient selection.

Area of Science:

  • Oncology
  • Immunology
  • Genomics

Background:

  • Immunotherapy, utilizing inhibitors of programmed death-1 (PD-1) and cytotoxic T lymphocyte-associated protein-4 (CTLA-4), represents a significant advancement in cancer treatment.
  • Understanding the similarities and differences between PD-1 and CTLA-4 across various cancer types is crucial for optimizing therapeutic strategies.

Purpose of the Study:

  • To investigate the expression patterns of PD-1 and CTLA-4 in 33 distinct cancer types within The Cancer Genome Atlas (TCGA) database.
  • To explore the relationship between PD-1 and CTLA-4 expression, immune microenvironment subtypes, and overall patient survival.
  • To assess the correlation between these immune checkpoint molecules, tumor microenvironment characteristics, and potential drug sensitivity.

Main Methods:

  • Downloaded TNM stage, immune subtype, and tumor microenvironment data for 33 TCGA tumors.
  • Compared PD-1 and CTLA-4 expression in normal versus tumor tissues.
  • Utilized Cox analysis to assess the association between expression and overall survival.
  • Employed ESTIMATE software to evaluate immune cell infiltration and correlate PD-1/CTLA-4 expression with the tumor microenvironment and stemness, alongside gene-drug sensitivity analysis.

Main Results:

  • PD-1 and CTLA-4 exhibited high expression in specific cancers including breast invasive carcinoma (BRCA), cholangiocarcinoma (CHOL), esophageal carcinoma (ESCA), and kidney renal clear cell carcinoma (KIRC).
  • Expression levels were significantly correlated with immune subtypes C2 (IFN-γ-dominant) and C6 (TGF-β-dominant), and positively associated with tumor microenvironmental immune scores.
  • In kidney renal clear cell carcinoma, PD-1 and CTLA-4 expression strongly correlated with advanced clinical stage and a higher microenvironmental score.

Conclusions:

  • PD-1 and CTLA-4 expression are linked to patient prognosis across a majority of tumors studied.
  • These immune checkpoint molecules demonstrate a significant association with the tumor microenvironment.
  • The findings provide valuable insights for identifying patient populations likely to benefit from immunotherapy and guide future research directions.

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