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Retroviral Transduction of Helper T Cells as a Genetic Approach to Study Mechanisms Controlling their Differentiation and Function
Published on: November 4, 2016
RFX transcription factors control a miR-150/PDAP1 axis that restrains the proliferation of human T cells
Michele Chirichella1, Niccolò Bianchi1,2, Emina Džafo1
1Institute for Research in Biomedicine (IRB), Università della Svizzera italiana (USI), Bellinzona, Switzerland.
Abstract:
Within the immune system, microRNAs (miRNAs) exert key regulatory functions. However, what are the mRNA targets regulated by miRNAs and how miRNAs are transcriptionally regulated themselves remain for the most part unknown. We found that in primary human memory T helper lymphocytes, miR-150 was the most abundantly expressed miRNA, and its expression decreased drastically upon activation, suggesting regulatory roles. Constitutive MIR150 gene expression required the RFX family of transcription factors, and its activation-induced down-regulation was linked to their reduced expression. By performing miRNA pull-down and sequencing experiments, we identified PDGFA-associated protein 1 (PDAP1) as one main target of miR-150 in human T lymphocytes. PDAP1 acted as an RNA-binding protein (RBP), and its CRISPR/Cas-9-mediated deletion revealed that it prominently contributed to the regulation of T-cell proliferation. Overall, using an integrated approach involving quantitative analysis, unbiased genomics, and genome editing, we identified RFX factors, miR-150, and the PDAP1 RBP as the components of a regulatory axis that restrains proliferation of primary human T lymphocytes.
Insights
MicroRNAs (miRNAs) regulate T-cell proliferation. Researchers identified miR-150 as a key regulator, finding that PDAP1 protein restrains T-cell growth by interacting with miR-150.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- MicroRNAs (miRNAs) are crucial regulators within the immune system.
- Understanding miRNA targets and their transcriptional regulation is essential for deciphering immune cell function.
- The specific roles of miRNAs in T-cell activation and proliferation require further elucidation.
Purpose of the Study:
- To identify mRNA targets regulated by miRNAs in human T lymphocytes.
- To investigate the transcriptional regulation of key miRNAs, specifically miR-150.
- To uncover the regulatory mechanisms controlling T-cell proliferation.
Main Methods:
- Quantitative analysis of miRNA expression in primary human memory T helper lymphocytes.
- miRNA pull-down and sequencing to identify mRNA targets.
- CRISPR/Cas-9 genome editing to assess the function of identified targets.
- Analysis of transcription factor involvement (RFX family) in miRNA gene expression.
Main Results:
- miR-150 was the most abundant miRNA in resting T helper lymphocytes, decreasing upon activation.
- RFX transcription factors are required for constitutive MIR150 gene expression.
- PDGFA-associated protein 1 (PDAP1) was identified as a primary miR-150 target.
- PDAP1, an RNA-binding protein, significantly contributes to T-cell proliferation regulation.
Conclusions:
- A regulatory axis involving RFX factors, miR-150, and PDAP1 restrains primary human T lymphocyte proliferation.
- This study elucidates a novel mechanism controlling T-cell activation and expansion.
- Findings provide insights into the intricate molecular networks governing immune responses.
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