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Graph convolutional neural network applied to the prediction of normal boiling point.

Chen Qu1, Anthony J Kearsley1, Barry I Schneider1

  • 1National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD, 20899, USA.

Journal of Molecular Graphics & Modelling
|February 12, 2022
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Summary

A new machine learning model accurately predicts organic compound normal boiling points using graph neural networks. This method aids in rapid prediction and identifies data errors, improving chemical data reliability.

Keywords:
Deep learningGraph neural networkMachine learningNormal boiling point

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Area of Science:

  • Computational chemistry
  • Machine learning in chemical research

Background:

  • Accurate prediction of physical properties like normal boiling points is crucial for chemical engineering and research.
  • Existing methods for boiling point prediction can be limited in scope or require extensive input data.

Purpose of the Study:

  • To develop and validate a machine learning model for predicting normal boiling points of organic compounds.
  • To leverage graph neural networks for property prediction from molecular structures.

Main Methods:

  • Utilized a graph neural network (GNN) architecture for the machine learning model.
  • Extracted molecular features directly from 2D chemical structure sketches.
  • Trained and validated the model using experimental data from the NIST TRC SOURCE Data Archival System.

Main Results:

  • The final GNN model achieved high accuracy, predicting normal boiling points within 6 K (1.32% MAE).
  • The model demonstrated a low sample standard deviation of less than 8 K.
  • The model effectively identified erroneous data points within the training dataset.

Conclusions:

  • Graph neural networks offer a powerful approach for predicting physical properties of organic compounds.
  • The developed model provides a rapid and reliable method for normal boiling point prediction.
  • The model's ability to detect data errors highlights its utility in data curation and validation efforts.