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A Robust Discovery Platform for the Identification of Novel Mediators of Melanoma Metastasis
Published on: March 8, 2022
A Short Isoform of Spermatogenic Enzyme GAPDHS Functions as a Metabolic Switch and Limits Metastasis in Melanoma
Jennifer G Gill1,2, Samantha N Leef2, Vijayashree Ramesh2
1University of Texas Southwestern Medical Center, Department of Dermatology, Dallas, Texas.
Abstract:
Despite being the leading cause of cancer deaths, metastasis remains a poorly understood process. To identify novel regulators of metastasis in melanoma, we performed a large-scale RNA sequencing screen of 48 samples from patient-derived xenograft (PDX) subcutaneous melanomas and their associated metastases. In comparison with primary tumors, expression of glycolytic genes was frequently decreased in metastases, whereas expression of some tricarboxylic acid (TCA) cycle genes was increased in metastases. Consistent with these transcriptional changes, melanoma metastases underwent a metabolic switch characterized by decreased levels of glycolytic metabolites and increased abundance of TCA cycle metabolites. A short isoform of glyceraldehyde-3-phosphate dehydrogenase, spermatogenic (GAPDHS) lacking the N-terminal domain suppressed metastasis and regulated this metabolic switch. GAPDHS was downregulated in metastatic nodules from PDX models as well as in human patients. Overexpression of GAPDHS was sufficient to block melanoma metastasis, whereas its inhibition promoted metastasis, decreased glycolysis, and increased levels of certain TCA cycle metabolites and their derivatives including citrate, fumarate, malate, and aspartate. Isotope tracing studies indicated that GAPDHS mediates this shift through changes in pyruvate carboxylase activity and aspartate synthesis, both metabolic pathways critical for cancer survival and metastasis. Together, these data identify a short isoform of GAPDHS that limits melanoma metastasis and regulates central carbon metabolism.
Significance:
This study characterizes metabolic changes during cancer metastasis and identifies GAPDHS as a novel regulator of these processes in melanoma cells.
Insights
A novel short isoform of glyceraldehyde-3-phosphate dehydrogenase, spermatogenic (GAPDHS) suppresses melanoma metastasis. This isoform regulates a metabolic switch from glycolysis to the tricarboxylic acid (TCA) cycle, impacting cancer cell survival.
Area of Science:
- Oncology
- Metabolic pathways
- Cancer research
Background:
- Metastasis is a complex process and the leading cause of cancer mortality.
- Understanding metastasis regulators is crucial for developing effective cancer therapies.
- Melanoma metastasis involves significant metabolic reprogramming.
Purpose of the Study:
- To identify novel regulators of melanoma metastasis.
- To characterize metabolic alterations during melanoma metastasis.
- To investigate the role of glyceraldehyde-3-phosphate dehydrogenase, spermatogenic (GAPDHS) in melanoma metastasis and metabolism.
Main Methods:
- RNA sequencing of patient-derived xenograft (PDX) melanoma models and their metastases.
- Metabolomic analysis to compare primary tumors and metastases.
- Functional studies involving GAPDHS overexpression and inhibition.
- Isotope tracing to elucidate metabolic pathway involvement.
Main Results:
- Melanoma metastases exhibit decreased glycolysis and increased tricarboxylic acid (TCA) cycle gene expression and metabolites compared to primary tumors.
- A short isoform of GAPDHS was identified, downregulated in metastases, which suppresses metastasis and regulates this metabolic switch.
- Overexpression of GAPDHS inhibited metastasis, while its inhibition promoted metastasis and altered central carbon metabolism.
- GAPDHS influences pyruvate carboxylase activity and aspartate synthesis, critical for cancer survival.
Conclusions:
- A short isoform of GAPDHS acts as a suppressor of melanoma metastasis.
- GAPDHS regulates a metabolic shift critical for melanoma cell survival and metastatic potential.
- Targeting GAPDHS or its associated metabolic pathways may offer new therapeutic strategies for melanoma.
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