Related Experiment Video
Updated: Oct 3, 2025

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children
Published on: December 31, 2017
A Correlation Study of the Microbiota Between Oral Cavity and Tonsils in Children With Tonsillar Hypertrophy
He Xu1, Bijun Tian1, Weihua Shi1
1Pediatric Department, Peking University School and Hospital of Stomatology & National Center of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Research Center of Oral Biomaterials and Digital Medical Devices, Beijing, China.
Insights
Oral microbiome shifts are linked to tonsillar hypertrophy in children. Specific bacteria in saliva may indicate healthy or enlarged tonsils, suggesting new research directions for tonsil disease.
Area of Science:
- Microbiology
- Pediatric Health
- Oral Microbiome Research
Background:
- Tonsillar hypertrophy is common in young children, potentially causing airway obstruction.
- Microbial factors are implicated in the development of tonsillar hypertrophy.
- The oral cavity's unique microbiome composition influences other body sites.
Purpose of the Study:
- To investigate the correlation between oral cavity and tonsil microbiota in children with tonsillar hypertrophy.
- To identify microbial shifts associated with tonsillar hypertrophy.
- To explore potential oral microbial biomarkers for tonsil health.
Main Methods:
- Collected saliva, supragingival plaque, and tonsil surface samples from children with and without tonsillar hypertrophy.
- Utilized Illumina Miseq Sequencing of the 16S rRNA gene for microbiota analysis.
- Compared microbial composition and interactions between oral sites and tonsils.
Main Results:
- Tonsillar hypertrophy showed increased bacterial genera and intra-microbiota correlations on the tonsil surface.
- Both oral cavity and tonsil surface microbiomes shifted in hypertrophic states, with increased diversity and interactions.
- Newly detected genera in hypertrophy were linked to infection, inflammation, or antibiotic resistance.
- Saliva microbiota composition was more similar to tonsil surface microbiota than plaque.
- Johnsonella in saliva associated with healthy tonsils; Pseudoxanthomonas associated with hypertrophy.
Conclusions:
- Oral microbiota composition is linked to the healthy and hypertrophic states of tonsils in children.
- Specific oral bacterial genera may serve as indicators for tonsil health or disease.
- Findings suggest novel avenues for researching the role of oral microbiota in tonsil diseases.
Abstract:
Tonsillar hypertrophy is a common disease in 3-to-6-year-old children, which may cause serve symptoms like airway obstruction. Microbiological factors play an important role in the etiology of tonsillar hypertrophy. As the starting point of digestive and respiratory tracts, the microbial composition of the oral cavity is not only unique but also closely related to the resident microbiota in other body sites. Here we reported a correlation study of the microbiota between oral cavity and tonsils in children with tonsillar hypertrophy. Saliva, supragingival plaque, and wiped samples from the tonsil surface were collected from both tonsillar hypertrophy patients and participants with healthy tonsils and were then analyzed using Illumina Miseq Sequencing of the 16S rRNA gene. In the tonsillar hypertrophic state, more genera were detected on the tonsil surface than in the tonsil parenchyma, with more intra-microbiota correlations. When tonsillar hypertrophy occurred, both the oral cavity and tonsil surface endured microbiome shift with increased genera category and more active bacterial interactions. Over half of the newly detected genera from the tonsillar hypertrophic state were associated with infection and inflammation process or exhibited antibiotic-resistant characters. Of each individual, the microbial composition and structure of saliva seemed more similar to that of the tonsil surface, compared with the supragingival plaque. In salivary microbiota, genus Johnsonella might be relative with the healthy state of tonsils, while Pseudoxanthomonas might be relative with tonsillar hypertrophy. Our study supported the link between oral microbiota with the healthy and hypertrophic states of tonsils and may provide new directions for future researches in the specific role of oral microbiota in the etiology of tonsil diseases.
Related Concept Videos
Tonsillitis I: Introduction
Etiology
Three primary contributing factors have been identified.
Chronic Pharyngitis
Etiology
It often arises from persistent viral or bacterial infections affecting sinuses and tonsils.
Additional contributing factors include inadequate dental hygiene, mouth breathing, recurring tonsillitis, allergic rhinitis, laryngopharyngeal reflux, and exposure to smoke, chemicals, and other environmental pollutants. Allergic reactions to pollen, mold, and pet dander, chronic cough, excessive voice usage,...
Tonsillitis II: Management
Assessment of the Mouth
Mouth Inspection
The inspection begins with visually examining the mouth for symmetry, color, and size.
Sputum Studies I: Gram Stain, cytology, and Acid-fast smear and culture
Gram Stain
The Gram Stain is an integral part of sputum studies. It involves the staining of sputum, which permits...
Sputum Studies II: Culture and Sensitivity
Sputum culture and sensitivity is a medical procedure used to diagnose bacterial infections in the respiratory tract and select the most appropriate antibiotics for treatment. This process involves analyzing sputum samples of thick and opaque secretions produced in the lungs and airways. These samples are collected from patients and then sent to the laboratory for analysis.
The test can identify various pathogens responsible for respiratory infections, including Streptococcus,...

