Related Experiment Video
Updated: Oct 3, 2025

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children
Published on: December 31, 2017
Epidemiological and Microbiome Characterization of Black Tooth Stain in Preschool Children
Yu Zhang1, Rui Yu2, Jing-Yu Zhan1
1Shanghai Key Laboratory of Stomatology, Department of Preventive Dentistry, Shanghai Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, National Clinical Research Center for Oral Diseases, Shanghai Research Institute of Stomatology, Shanghai, China.
Insights
Extrinsic black tooth stain (BTS) in Chinese preschoolers is linked to diet and fluoride use. The oral microbiome in BTS cases shows distinct microbial biomarkers and a hyperactive metabolic state.
Area of Science:
- Oral microbiology
- Pediatric dentistry
- Epidemiology
Background:
- Extrinsic black tooth stain (BTS) is a common cosmetic concern in children.
- Understanding the factors contributing to BTS is crucial for prevention and management.
Purpose of the Study:
- To investigate the epidemiological characteristics of BTS in Chinese preschool children.
- To analyze the microbial variations in dental plaque and saliva associated with BTS.
Main Methods:
- A cross-sectional study involving 250 preschool children (3-4 years) in Shanghai.
- Case-control design comparing children with BTS (n=21) and without (n=48).
- 16S rRNA sequencing was used to characterize oral microbial communities; statistical analyses evaluated associated factors.
Main Results:
- BTS prevalence was 12.4%, with an average of 13.7 stained teeth per child.
- BTS was associated with lower caries burden, better oral hygiene, less frequent intake of marmalade/honey, and regular fluoride application.
- Dental plaque in BTS cases showed higher richness and altered beta diversity, with specific microbial biomarkers identified.
Conclusions:
- BTS in preschool children has distinct epidemiological and microbial features.
- Specific microbial biomarkers in the oral microbiome may indicate BTS and aid in diagnosis and prognosis.
Objective:
To assess the epidemiologic attributes and microbial variations associated with extrinsic black tooth stain (BTS) among Chinese preschool children.
Methods:
This cross-sectional study included 250 preschool children (3-4 years) from three kindergartens in Shanghai, China. Following clinical examination, and using a case-control design, saliva and dental plaque specimens were collected from caries-free participants with (n = 21, BTS group) and without (n = 48, control group) BTS. The chi-square test and logistic regression model were used to evaluate factors associated with BTS. 16S rRNA sequencing were used to characterize the associated microbial communities.
Results:
BTS was detected in 12.4% of participants, with a mean of 13.7 black-stained teeth. Participants with BTS had a lower caries burden and better oral hygiene (P = 0.003). Children with less frequent intake of marmalade or honey (P = 0.033) and regular application of fluoride (P = 0.007) had a lower likelihood of having BTS. Microbiota analysis revealed 14 phyla, 35 classes, 63 orders, 113 families, 221 genera, 452 species, and 1,771 operational taxonomic units (OTUs). In terms of microbial diversity, no significant differences were observed in the saliva of the two groups (P > 0.05). Dental plaque from the BTS group exhibited higher OTU richness but lower evenness than that from the control group (Chao P = 0.006, Shannon P = 0.007, respectively) and showed a significant difference in β diversity (P = 0.002). The microbiome in the two groups was characterized by various microbial biomarkers, such as Pseudomonas fluorescens, Leptotrichia sp._HMT_212, Actinomyces sp._HMT_169, and Aggregatibacter sp._HMT_898 in plaques from the BTS group. Functional analysis of the microbial species suggested the existence of a hyperactive metabolic state on teeth surfaces with BTS plaques and revealed that ferric iron, the iron complex transport system, and the iron (III) transport system were more abundant in BTS plaque samples.
Conclusions:
This study provides insights into the epidemiologic and microbial features of BTS in preschool children. The microbiome in BTS is characterized by various microbial biomarkers, which can serve as indicators for BTS diagnosis and prognosis.
Related Concept Videos
Assessment of the Mouth
Mouth Inspection
The inspection begins with visually examining the mouth for symmetry, color, and size.
Teeth
In the bud stage, the tooth germ (an aggregation of cells) starts to form in the developing jawbone. During the cap stage, the tooth germ differentiates into enamel organ, dental papilla, and dental sac, which will later develop into the tooth's enamel, dentin...
Tooth Anatomy
The Crown, Neck, and Root
The visible part of the tooth is referred to as the crown. It's covered by enamel, the hardest substance in the human body. The crown is uniquely shaped for each type of tooth, allowing for different functions such as cutting, tearing, or...

