N-6-Methyladenosine in Vasoactive microRNAs during Hypoxia; A Novel Role for METTL4

Daphne A L van den Homberg1,2, Reginald V C T van der Kwast1,2, Paul H A Quax1,2

  • 1Department of Surgery, Leiden University Medical Center, 2300 RC Leiden, The Netherlands.

Insights

N-6-methyladenosine (m6A) modification is common in vasoactive microRNAs within fibroblasts. Hypoxia increases m6A levels, primarily driven by METTL4, impacting microRNA function and gene regulation.

Area of Science:

  • Molecular Biology
  • Epigenetics
  • RNA Biology

Background:

  • N-6-methyladenosine (m6A) is the most abundant RNA modification in eukaryotes.
  • m6A is dynamically regulated by writer and eraser enzymes, influencing mRNA stability, splicing, and microRNA processing.
  • Hypoxia-induced changes in m6A impact cellular functions, including heart failure.

Purpose of the Study:

  • To investigate vasoactive microRNA m6A methylation in fibroblasts.
  • To determine the effect of hypoxia on microRNA m6A levels.
  • To identify the specific enzymes responsible for hypoxia-induced m6A changes in microRNAs.

Main Methods:

  • m6A immunoprecipitation was used to detect m6A modification in microRNAs.
  • Fibroblasts and a human fibroblast cell line were utilized.
  • Silencing of m6A writer and eraser enzymes, followed by immunoprecipitation, identified key regulatory enzymes.
  • m6A-methylated microRNA mimics were employed to assess functional impact.

Main Results:

  • At least 16 out of 19 investigated vasoactive microRNAs showed m6A modification in fibroblasts.
  • Hypoxia significantly increased mature microRNA m6A levels.
  • METTL4, an snRNA m6A methyltransferase, was identified as the primary enzyme responsible for the hypoxia-induced increase in m6A.
  • MicroRNA m6A directly influences the efficacy of downstream target mRNA repression.

Conclusions:

  • Vasoactive microRNAs are frequently m6A methylated in fibroblasts.
  • Hypoxia dynamically regulates microRNA m6A methylation, with METTL4 playing a key role.
  • MicroRNA m6A modification is a significant regulatory mechanism affecting gene expression and cellular responses.

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