Related Experiment Video
Updated: Oct 3, 2025

A Method for Measuring RNA N6-methyladenosine Modifications in Cells and Tissues
Published on: December 5, 2016
N-6-Methyladenosine in Vasoactive microRNAs during Hypoxia; A Novel Role for METTL4
Daphne A L van den Homberg1,2, Reginald V C T van der Kwast1,2, Paul H A Quax1,2
1Department of Surgery, Leiden University Medical Center, 2300 RC Leiden, The Netherlands.
Abstract:
N-6-methyladenosine (m6A) is the most prevalent post-transcriptional RNA modification in eukaryotic cells. The modification is reversible and can be dynamically regulated by writer and eraser enzymes. Alteration in the levels of these enzymes can lead to changes in mRNA stability, alternative splicing or microRNA processing, depending on the m6A-binding proteins. Dynamic regulation of mRNA m6A methylation after ischemia and hypoxia influences mRNA stability, alternative splicing and translation, contributing to heart failure. In this study, we studied vasoactive microRNA m6A methylation in fibroblasts and examined the effect of hypoxia on microRNAs methylation using m6A immunoprecipitation. Of the 19 microRNAs investigated, at least 16 contained m6A in both primary human fibroblasts and a human fibroblast cell line, suggesting vasoactive microRNAs are commonly m6A methylated in fibroblasts. More importantly, we found that mature microRNA m6A levels increased upon subjecting cells to hypoxia. By silencing different m6A writer and eraser enzymes followed by m6A immunoprecipitation, we identified METTL4, an snRNA m6A methyltransferase, to be predominantly responsible for the increase in m6A modification. Moreover, by using m6A-methylated microRNA mimics, we found that microRNA m6A directly affects downstream target mRNA repression efficacy. Our findings highlight the regulatory potential of the emerging field of microRNA modifications.
Insights
N-6-methyladenosine (m6A) modification is common in vasoactive microRNAs within fibroblasts. Hypoxia increases m6A levels, primarily driven by METTL4, impacting microRNA function and gene regulation.
Area of Science:
- Molecular Biology
- Epigenetics
- RNA Biology
Background:
- N-6-methyladenosine (m6A) is the most abundant RNA modification in eukaryotes.
- m6A is dynamically regulated by writer and eraser enzymes, influencing mRNA stability, splicing, and microRNA processing.
- Hypoxia-induced changes in m6A impact cellular functions, including heart failure.
Purpose of the Study:
- To investigate vasoactive microRNA m6A methylation in fibroblasts.
- To determine the effect of hypoxia on microRNA m6A levels.
- To identify the specific enzymes responsible for hypoxia-induced m6A changes in microRNAs.
Main Methods:
- m6A immunoprecipitation was used to detect m6A modification in microRNAs.
- Fibroblasts and a human fibroblast cell line were utilized.
- Silencing of m6A writer and eraser enzymes, followed by immunoprecipitation, identified key regulatory enzymes.
- m6A-methylated microRNA mimics were employed to assess functional impact.
Main Results:
- At least 16 out of 19 investigated vasoactive microRNAs showed m6A modification in fibroblasts.
- Hypoxia significantly increased mature microRNA m6A levels.
- METTL4, an snRNA m6A methyltransferase, was identified as the primary enzyme responsible for the hypoxia-induced increase in m6A.
- MicroRNA m6A directly influences the efficacy of downstream target mRNA repression.
Conclusions:
- Vasoactive microRNAs are frequently m6A methylated in fibroblasts.
- Hypoxia dynamically regulates microRNA m6A methylation, with METTL4 playing a key role.
- MicroRNA m6A modification is a significant regulatory mechanism affecting gene expression and cellular responses.
Related Concept Videos
MicroRNAs
Regulation of Angiogenesis and Blood Supply
Hypoxia
Types of Hypoxia
There are four primary types of hypoxia, each resulting from a different cause:
1. Anemic hypoxia: This type occurs due to insufficient oxygen delivery caused by a lack of red blood cells (RBCs) or RBCs with abnormal or...
RNA Stability
Adaptive Mechanisms in Cancer Cells
Some of the advantages that cancer cells have on normal cells include - enhanced ability to divide without terminally differentiating, induce new blood vessel formation,...
Translational Regulation

