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Updated: Oct 3, 2025

A Method for Measuring RNA N6-methyladenosine Modifications in Cells and Tissues
Published on: December 5, 2016
[Differential on N6-methyladenosine modification of circRNA in early inflammation of silicosis]
Abstract:
Objective: To explore the difference of methylation of circRNA related m6A in early inflammation of silicosis and to elucidate the underlying molecular mechanism of circRNA involved in the process of silicosis. Methods: The activation markers of macrophages were detected by Western blotting (WB) in THP-1-derived macrophages. The cell viability was detected with CCK8, by which the stimulation concentration and time of silica were determined. The methylation of total RNA was determined by colorimetry, and the expression of RNA m6A methylase, demethylase and reading protein were detected by Western blotting in mouse model of silicosis. The differential expression of m6A modified circRNA in lung tissues form silicosis and control mice was obtained through Arraystar m6A circRNA epigenetic transcriptome Chip and verified by RT-PCR. Results: The concentration of SiO(2) at 50 μg/cm(2) had the most significant effect on the activation markers and activity of macrophages. Compared with the control group, SiO(2) increased the total RNA m6A level of macrophages, and there were significant differences in the expression of methylase METTL3 and reading protein YTDHF3. High throughput sequencing analysis showed that compared with the control group, the methylation levels of 132 circRNA m6A in the lung of silicosis model mice were increased, while the methylation levels of 296 circRNA m6A were decreased, and then the target circSLC2A13 was screened based on the basic expression. Further verification showed that SiO(2) significantly increased the expression of circSLC2A13 and m6A modification in macrophages. Conclusion: The methylation of circRNA m6A is involved in the activation of macrophages in early inflammation of silicosis.
Insights
Silicosis involves changes in circular RNA (circRNA) methylation, specifically N6-methyladenosine (m6A) modifications. This study reveals circRNA m6A methylation plays a role in macrophage activation during early silicosis inflammation.
Area of Science:
- Pulmonary Medicine
- Epigenetics
- Molecular Biology
Background:
- Silicosis is a progressive lung disease caused by silica dust inhalation.
- Early inflammatory responses in silicosis involve macrophage activation.
- The role of circular RNA (circRNA) N6-methyladenosine (m6A) modifications in silicosis pathogenesis remains unclear.
Purpose of the Study:
- To investigate differential circRNA m6A methylation in early silicosis inflammation.
- To elucidate the molecular mechanisms of circRNA involvement in silicosis.
- To identify specific circRNAs and their methylation patterns in silicosis.
Main Methods:
- THP-1 derived macrophages were used to assess silica exposure effects on macrophage activation and viability.
- RNA methylation levels, and expression of m6A-related proteins were analyzed in a mouse silicosis model.
- CircRNA m6A epigenetic transcriptome profiling and RT-PCR were employed to identify differentially methylated circRNAs.
Main Results:
- Silica exposure (50 μg/cm(2)) significantly activated macrophages and increased total RNA m6A levels.
- Differential expression of METTL3 (methylase) and YTHDF3 (reading protein) was observed.
- High-throughput sequencing identified altered m6A methylation in numerous circRNAs, with circSLC2A13 showing increased expression and m6A modification.
Conclusions:
- CircRNA m6A methylation is implicated in macrophage activation during the early stages of silicosis.
- Specific circRNAs, such as circSLC2A13, are significantly affected by silica exposure.
- Understanding these epigenetic modifications may offer novel therapeutic targets for silicosis.
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