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Updated: Oct 3, 2025

Oligopeptide Competition Assay for Phosphorylation Site Determination
Published on: May 18, 2017
An AMPKα2-specific phospho-switch controls lysosomal targeting for activation
Kaitlin R Morrison1, William J Smiles2, Naomi X Y Ling2
1Flinders Health and Medical Research Institute, Flinders University, Adelaide, SA 5042, Australia.
Abstract:
AMP-activated protein kinase (AMPK) and mechanistic target of rapamycin complex 1 (mTORC1) are metabolic kinases that co-ordinate nutrient supply with cell growth. AMPK negatively regulates mTORC1, and mTORC1 reciprocally phosphorylates S345/7 in both AMPK α-isoforms. We report that genetic or torin1-induced loss of α2-S345 phosphorylation relieves suppression of AMPK signaling; however, the regulatory effect does not translate to α1-S347 in HEK293T or MEF cells. Dephosphorylation of α2-S345, but not α1-S347, transiently targets AMPK to lysosomes, a cellular site for activation by LKB1. By mass spectrometry, we find that α2-S345 is basally phosphorylated at 2.5-fold higher stoichiometry than α1-S347 in HEK293T cells and, unlike α1, phosphorylation is partially retained after prolonged mTORC1 inhibition. Loss of α2-S345 phosphorylation in endogenous AMPK fails to sustain growth of MEFs under amino acid starvation conditions. These findings uncover an α2-specific mechanism by which AMPK can be activated at lysosomes in the absence of changes in cellular energy.
Insights
AMP-activated protein kinase (AMPK) alpha2-S345 phosphorylation is crucial for lysosomal targeting and activation, particularly under nutrient starvation. This alpha2-specific mechanism enables AMPK activation independently of cellular energy levels.
Area of Science:
- Cellular Metabolism
- Molecular Biology
- Signal Transduction
Background:
- AMP-activated protein kinase (AMPK) and mechanistic target of rapamycin complex 1 (mTORC1) are key metabolic regulators.
- mTORC1 reciprocally phosphorylates AMPK alpha-isoforms at specific serine residues (S345/7).
- The functional significance of this reciprocal phosphorylation, particularly isoform-specific roles, remains incompletely understood.
Purpose of the Study:
- To investigate the isoform-specific regulatory role of AMPK alpha-S345/7 phosphorylation by mTORC1.
- To elucidate the cellular localization and activation mechanisms of AMPK in response to altered phosphorylation states.
- To determine the impact of alpha2-S345 phosphorylation loss on cellular growth under nutrient stress.
Main Methods:
- Genetic manipulation to abolish alpha2-S345 phosphorylation.
- Pharmacological inhibition of mTORC1 using torin1.
- Mass spectrometry for quantitative phosphoproteomics.
- Cellular localization studies using immunofluorescence.
- Analysis of MEF cell growth under amino acid starvation.
Main Results:
- Loss of alpha2-S345 phosphorylation, but not alpha1-S347, relieves mTORC1 suppression of AMPK signaling.
- Dephosphorylation of alpha2-S345, unlike alpha1-S347, transiently targets AMPK to lysosomes for LKB1-mediated activation.
- Alpha2-S345 exhibits higher basal phosphorylation stoichiometry than alpha1-S347 and retains partial phosphorylation after prolonged mTORC1 inhibition.
- Loss of alpha2-S345 phosphorylation impairs MEF cell growth during amino acid starvation.
Conclusions:
- AMPK alpha2-S345 phosphorylation is a critical regulator of AMPK activation at lysosomes, independent of cellular energy status.
- This alpha2-specific mechanism provides a novel pathway for nutrient-sensing and cellular adaptation.
- Targeting this pathway could offer therapeutic strategies for metabolic disorders.
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