Related Experiment Video
Updated: Oct 3, 2025

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Noncoding RNAs in Drug Resistance of Gastrointestinal Stromal Tumor
Jiehan Li1, Shuning Guo1, Zhenqiang Sun2
1Department of Gastroenterology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Abstract:
Gastrointestinal stromal tumor (GIST) is the most common mesenchymal tumor in the gastrointestinal tracts and a model for the targeted therapy of solid tumors because of the oncogenic driver mutations in KIT and PDGDRA genes, which could be effectively inhibited by the very first targeted agent, imatinib mesylate. Most of the GIST patients could benefit a lot from the targeted treatment of this receptor tyrosine kinase inhibitor. However, more than 50% of the patients developed resistance within 2 years after imatinib administration, limiting the long-term effect of imatinib. Noncoding RNAs (ncRNAs), the non-protein coding transcripts of human, were demonstrated to play pivotal roles in the resistance of various chemotherapy drugs. In this review, we summarized the mechanisms of how ncRNAs functioning on the drug resistance in GIST. During the drug resistance of GIST, there were five regulating mechanisms where the functions of ncRNAs concentrated: oxidative phosphorylation, autophagy, apoptosis, drug target changes, and some signaling pathways. Also, these effects of ncRNAs in drug resistance were divided into two aspects. How ncRNAs regulate drug resistance in GIST was further summarized according to ncRNA types, different drugs and categories of resistance. Moreover, clinical applications of these ncRNAs in GIST chemotherapies concentrated on the prognostic biomarkers and novel therapeutic targets.
Insights
Noncoding RNAs (ncRNAs) drive imatinib resistance in gastrointestinal stromal tumors (GIST) by affecting key cellular processes. Understanding these ncRNA mechanisms offers new therapeutic targets for overcoming drug resistance in GIST patients.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Gastrointestinal stromal tumor (GIST) is the most common gastrointestinal mesenchymal tumor.
- GIST serves as a model for targeted therapy due to driver mutations in KIT and PDGDRA genes.
- Imatinib mesylate is a primary targeted therapy agent for GIST, but resistance develops in over 50% of patients within two years.
Purpose of the Study:
- To review and summarize the mechanisms by which noncoding RNAs (ncRNAs) contribute to drug resistance in GIST.
- To explore the clinical applications of ncRNAs in GIST chemotherapies.
Main Methods:
- Literature review summarizing existing research on ncRNAs and GIST drug resistance.
- Categorization of ncRNA regulatory mechanisms involved in GIST drug resistance.
- Analysis of ncRNA roles based on ncRNA type, drug, and resistance category.
Main Results:
- ncRNAs play pivotal roles in chemotherapy drug resistance.
- Five main regulatory mechanisms of ncRNAs in GIST drug resistance were identified: oxidative phosphorylation, autophagy, apoptosis, drug target changes, and signaling pathways.
- ncRNA functions in drug resistance were analyzed from two aspects and categorized by ncRNA type, drug, and resistance type.
Conclusions:
- ncRNAs are key regulators of imatinib resistance in GIST.
- Understanding ncRNA mechanisms provides insights into overcoming drug resistance.
- ncRNAs hold potential as prognostic biomarkers and novel therapeutic targets for GIST.
Related Concept Videos
Treatment Resistant Cancers
Experimental RNAi
lncRNA - Long Non-coding RNAs
MicroRNAs
Non-LTR Retrotransposons
Types of RNA
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...

