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Self-Assembly of Antimicrobial Peptoids Impacts Their Biological Effects on ESKAPE Bacterial Pathogens
Josefine Eilsø Nielsen1,2, Morgan Ashley Alford3, Deborah Bow Yue Yung4
1Department of Bioengineering, School of Medicine, Stanford University, Stanford, California 94305, United States.
Abstract:
Antimicrobial peptides (AMPs) are promising pharmaceutical candidates for the prevention and treatment of infections caused by multidrug-resistant ESKAPE pathogens, which are responsible for the majority of hospital-acquired infections. Clinical translation of AMPs has been limited, in part by apparent toxicity on systemic dosing and by instability arising from susceptibility to proteolysis. Peptoids (sequence-specific oligo-N-substituted glycines) resist proteolytic digestion and thus are of value as AMP mimics. Only a few natural AMPs such as LL-37 and polymyxin self-assemble in solution; whether antimicrobial peptoids mimic these properties has been unknown. Here, we examine the antibacterial efficacy and dynamic self-assembly in aqueous media of eight peptoid mimics of cationic AMPs designed to self-assemble and two nonassembling controls. These amphipathic peptoids self-assembled in different ways, as determined by small-angle X-ray scattering; some adopt helical bundles, while others form core-shell ellipsoidal or worm-like micelles. Interestingly, many of these peptoid assemblies show promising antibacterial, antibiofilm activity in vitro in media, under host-mimicking conditions and antiabscess activity in vivo. While self-assembly correlated overall with antibacterial efficacy, this correlation was imperfect. Certain self-assembled morphologies seem better-suited for antibacterial activity. In particular, a peptoid exhibiting a high fraction of long, worm-like micelles showed reduced antibacterial, antibiofilm, and antiabscess activity against ESKAPE pathogens compared with peptoids that form ellipsoidal or bundled assemblies. This is the first report of self-assembling peptoid antibacterials with activity against in vivo biofilm-like infections relevant to clinical medicine.
Insights
Antimicrobial peptoids that self-assemble show promise against drug-resistant bacteria. Specific assembly structures, like ellipsoidal or bundled micelles, enhance antibacterial and anti-biofilm activity, offering new therapeutic strategies.
Area of Science:
- Biochemistry
- Materials Science
- Infectious Diseases
Background:
- Antimicrobial peptides (AMPs) are vital for combating multidrug-resistant pathogens but face challenges like toxicity and proteolysis.
- Peptoids, resistant to proteolysis, are explored as AMP mimics, with their self-assembly properties and efficacy against ESKAPE pathogens being largely unknown.
Purpose of the Study:
- To investigate the antibacterial efficacy and self-assembly characteristics of peptoid mimics of cationic antimicrobial peptides.
- To determine if self-assembly influences the antimicrobial activity of peptoids against ESKAPE pathogens.
Main Methods:
- Designed and synthesized eight self-assembling peptoid mimics and two non-assembling controls.
- Utilized small-angle X-ray scattering to characterize the self-assembled morphologies (helical bundles, ellipsoidal micelles, worm-like micelles).
- Assessed in vitro antibacterial and antibiofilm activity, and in vivo anti-abscess activity against ESKAPE pathogens.
Main Results:
- Amphipathic peptoids demonstrated diverse self-assembly in aqueous media, forming various structures.
- Many self-assembled peptoid structures exhibited significant antibacterial, antibiofilm, and anti-abscess activity.
- A correlation between self-assembly and antibacterial efficacy was observed, though not perfect; worm-like micelle structures showed reduced activity compared to others.
Conclusions:
- Self-assembling peptoids represent a promising class of antimicrobials effective against multidrug-resistant pathogens.
- Specific self-assembled morphologies, such as ellipsoidal or bundled structures, are more effective than worm-like micelles against ESKAPE pathogens.
- This study pioneers self-assembling peptoid antibacterials with activity against in vivo biofilm-like infections, relevant for clinical applications.
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