Identification and characterization of inhibitory nanobody against p38δ

Chenliang Zhang1, Qiulin Tang1, Hongwei Xia1

  • 1Laboratory of Molecular Targeted Therapy in Oncology, West China Hospital, Sichuan University, Chengdu, Sichuan, 610041, China.

Insights

Researchers developed specific nanobodies targeting p38δ, a protein kinase implicated in diseases like cancer and diabetes. These nanobodies show potential for diagnosing and treating p38δ-related conditions.

Area of Science:

  • Molecular Biology
  • Immunology
  • Biochemistry

Background:

  • p38δ, a p38 mitogen-activated protein kinase (MAPK), exhibits specific expression and is implicated in diseases including diabetes, neurodegeneration, inflammation, and cancer.
  • p38δ represents a potential therapeutic and diagnostic target due to its role in various pathologies.
  • Nanobodies, derived from single-domain antibody fragments, offer advantages in antigen binding, stability, solubility, and production.

Purpose of the Study:

  • To isolate and characterize novel nanobodies with high specificity and affinity for p38δ.
  • To evaluate the therapeutic potential of these nanobodies in inhibiting p38δ activity and related cellular processes.

Main Methods:

  • Phage display technology was employed to screen a synthetic nanobody library for binders against p38δ.
  • Selected nanobodies (Nb13-6 and Nb13-1) were assessed for binding affinity, cross-reactivity with other p38 MAPKs, and stability under varying thermal and pH conditions.
  • Structural modeling and docking analyses were performed to understand nanobody-p38δ interactions.
  • The functional impact of Nb13-6 on p38δ kinase activity and cancer cell proliferation was investigated.

Main Results:

  • Two nanobodies, Nb13-6 and Nb13-1, were identified with high binding activity to p38δ.
  • These nanobodies demonstrated reduced cross-reactivity with other p38 MAPK family members and exhibited excellent thermal and pH stability.
  • Nb13-6 was found to bind to the activation loop of p38δ.
  • Nb13-6 effectively inhibited p38δ protein kinase activity and suppressed the growth of cancer cells.

Conclusions:

  • p38δ-specific nanobodies, particularly Nb13-6, have been successfully developed.
  • These nanobodies possess desirable characteristics for potential diagnostic and therapeutic applications.
  • The findings support the utility of p38δ-specific nanobodies in addressing p38δ-associated diseases.

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