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Updated: Oct 2, 2025

Chemical Inactivation of the E3 Ubiquitin Ligase Cereblon by Pomalidomide-based Homo-PROTACs
Published on: May 15, 2019
Proteomic profiling reveals CDK6 upregulation as a targetable resistance mechanism for lenalidomide in multiple
Yuen Lam Dora Ng1, Evelyn Ramberger1,2,3, Stephan R Bohl4,5
1Department of Hematology, Oncology and Cancer Immunology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.
Abstract:
The immunomodulatory drugs (IMiDs) lenalidomide and pomalidomide are highly effective treatments for multiple myeloma. However, virtually all patients eventually relapse due to acquired drug resistance with resistance-causing genetic alterations being found only in a small subset of cases. To identify non-genetic mechanisms of drug resistance, we here perform integrated global quantitative tandem mass tag (TMT)-based proteomic and phosphoproteomic analyses and RNA sequencing in five paired pre-treatment and relapse samples from multiple myeloma patients. These analyses reveal a CDK6-governed protein resistance signature that includes myeloma high-risk factors such as TRIP13 and RRM1. Overexpression of CDK6 in multiple myeloma cell lines reduces sensitivity to IMiDs while CDK6 inhibition by palbociclib or CDK6 degradation by proteolysis targeting chimeras (PROTACs) is highly synergistic with IMiDs in vitro and in vivo. This work identifies CDK6 upregulation as a druggable target in IMiD-resistant multiple myeloma and highlights the use of proteomic studies to uncover non-genetic resistance mechanisms in cancer.
Insights
Immunomodulatory drugs (IMiDs) resistance in multiple myeloma is often non-genetic. Researchers identified CDK6 upregulation as a key driver, suggesting CDK6 inhibition as a potential therapeutic strategy for relapsed patients.
Area of Science:
- Oncology
- Molecular Biology
- Pharmacology
Background:
- Immunomodulatory drugs (IMiDs) like lenalidomide and pomalidomide are effective multiple myeloma treatments.
- Most patients eventually develop acquired drug resistance, leading to relapse.
- Genetic alterations explain only a fraction of IMiD resistance cases.
Purpose of the Study:
- To investigate non-genetic mechanisms of acquired drug resistance to IMiDs in multiple myeloma.
- To identify novel therapeutic targets for IMiD-resistant multiple myeloma.
Main Methods:
- Integrated proteomic, phosphoproteomic (TMT-based), and RNA sequencing analyses.
- Paired pre-treatment and relapse samples from five multiple myeloma patients.
- In vitro and in vivo studies using multiple myeloma cell lines and evaluating drug sensitivity.
Main Results:
- A CDK6-governed protein resistance signature was identified, including high-risk factors TRIP13 and RRM1.
- CDK6 overexpression reduced sensitivity to IMiDs in multiple myeloma cell lines.
- CDK6 inhibition (palbociclib) or degradation (PROTACs) showed synergistic effects with IMiDs.
Conclusions:
- CDK6 upregulation is a druggable target in IMiD-resistant multiple myeloma.
- Proteomic studies are valuable for uncovering non-genetic cancer drug resistance mechanisms.
- Targeting CDK6 offers a promising strategy to overcome IMiD resistance in multiple myeloma.
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