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Related Experiment Videos

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and

Michael C Schatz1,2, Anthony A Philippakis3, Enis Afgan1

  • 1Department of Biology, Johns Hopkins University, Baltimore, MD, USA.

Cell Genomics
|February 24, 2022
PubMed

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Summary
This summary is machine-generated.

The NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL) provides a unified cloud platform for genomics data management and analysis. It enables secure data sharing and collaboration, accelerating genomic research and discovery.

Area of Science:

  • Genomics
  • Bioinformatics
  • Computational Biology

Background:

  • Genomics research requires robust infrastructure for data storage, management, and analysis.
  • Existing platforms often involve data movement, posing security and logistical challenges.
  • A unified, secure, and scalable computing environment is needed for large-scale genomic data analysis and collaboration.

Purpose of the Study:

  • To introduce the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL).
  • To describe the AnVIL's ecosystem, interoperability, and contribution to genomic data sharing.
  • To highlight AnVIL's role in enabling population-scale genomic analysis and collaborative research.

Main Methods:

  • AnVIL is a federated cloud platform designed for genomics data management and analysis.

Related Experiment Videos

  • It inverts traditional data sharing models by eliminating data movement and enhancing security.
  • Core components include Terra, Gen3, Galaxy, RStudio/Bioconductor, Dockstore, and Jupyter.

    • Main Results:

    • AnVIL provides a unified environment for genomics data storage, management, and analysis.
    • It facilitates population-scale analysis and collaboration through secure data sharing.
    • Flagship genomics datasets are available within the AnVIL ecosystem.

    Conclusions:

    • AnVIL offers a scalable and secure platform for researchers to access and analyze large-scale genomic data.
    • It promotes responsible data sharing and interoperability, driving new discoveries.
    • AnVIL fosters collaboration and innovation in genomic data science.