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Updated: Oct 2, 2025

CIRCLE-Seq for Interrogation of Off-Target Gene Editing
Published on: November 1, 2024
Precision targeting tumor cells using cancer-specific InDel mutations with CRISPR-Cas9
Taejoon Kwon1,2, Jae Sun Ra3, Soyoung Lee2
1Center for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea; tkwon@unist.ac.kr swcho@unist.ac.kr kmyung@ibs.re.kr.
Abstract:
An ideal cancer therapeutic strategy involves the selective killing of cancer cells without affecting the surrounding normal cells. However, researchers have failed to develop such methods for achieving selective cancer cell death because of shared features between cancerous and normal cells. In this study, we have developed a therapeutic strategy called the cancer-specific insertions-deletions (InDels) attacker (CINDELA) to selectively induce cancer cell death using the CRISPR-Cas system. CINDELA utilizes a previously unexplored idea of introducing CRISPR-mediated DNA double-strand breaks (DSBs) in a cancer-specific fashion to facilitate specific cell death. In particular, CINDELA targets multiple InDels with CRISPR-Cas9 to produce many DNA DSBs that result in cancer-specific cell death. As a proof of concept, we demonstrate here that CINDELA selectively kills human cancer cell lines, xenograft human tumors in mice, patient-derived glioblastoma, and lung patient-driven xenograft tumors without affecting healthy human cells or altering mouse growth.
Insights
Researchers developed a new cancer therapy called CINDELA that uses CRISPR-Cas9 to selectively kill cancer cells by targeting DNA insertions-deletions (InDels). This innovative approach successfully eliminated various cancer types without harming healthy cells.
Area of Science:
- Oncology
- Molecular Biology
- Gene Editing
Background:
- Achieving selective cancer cell death remains a significant challenge due to shared features between cancer and normal cells.
- Current therapeutic strategies often struggle to differentiate and eliminate cancerous cells without causing collateral damage to healthy tissues.
Purpose of the Study:
- To develop a novel cancer therapeutic strategy for selective cancer cell elimination.
- To utilize the CRISPR-Cas system for inducing cancer-specific cell death through DNA double-strand breaks (DSBs).
Main Methods:
- Developed the cancer-specific insertions-deletions (InDels) attacker (CINDELA) strategy.
- Employed CRISPR-Cas9 technology to introduce multiple DNA DSBs specifically in cancer cells.
- Targeted cancer-specific InDels to trigger selective cell death pathways.
Main Results:
- CINDELA demonstrated selective killing of human cancer cell lines in vitro.
- The strategy effectively eradicated xenograft human tumors in mice.
- CINDELA showed efficacy in patient-derived glioblastoma and lung cancer xenograft models.
- No adverse effects were observed in healthy human cells or on mouse growth.
Conclusions:
- CINDELA represents a novel and effective strategy for cancer therapy by leveraging CRISPR-mediated DSBs.
- The approach offers high specificity, targeting cancer cells while sparing normal tissues.
- This proof-of-concept study validates CINDELA's potential for clinical translation in treating various cancers.
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