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Updated: Oct 2, 2025

CIRCLE-Seq for Interrogation of Off-Target Gene Editing
Published on: November 1, 2024
Precision targeting tumor cells using cancer-specific InDel mutations with CRISPR-Cas9
Taejoon Kwon1,2, Jae Sun Ra3, Soyoung Lee2
1Center for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea; tkwon@unist.ac.kr swcho@unist.ac.kr kmyung@ibs.re.kr.
Researchers developed a new cancer therapy called CINDELA that uses CRISPR-Cas9 to selectively kill cancer cells by targeting DNA insertions-deletions (InDels). This innovative approach successfully eliminated various cancer types without harming healthy cells.
Area of Science:
- Oncology
- Molecular Biology
- Gene Editing
Background:
- Achieving selective cancer cell death remains a significant challenge due to shared features between cancer and normal cells.
- Current therapeutic strategies often struggle to differentiate and eliminate cancerous cells without causing collateral damage to healthy tissues.
Purpose of the Study:
- To develop a novel cancer therapeutic strategy for selective cancer cell elimination.
- To utilize the CRISPR-Cas system for inducing cancer-specific cell death through DNA double-strand breaks (DSBs).
Main Methods:
- Developed the cancer-specific insertions-deletions (InDels) attacker (CINDELA) strategy.
- Employed CRISPR-Cas9 technology to introduce multiple DNA DSBs specifically in cancer cells.
- Targeted cancer-specific InDels to trigger selective cell death pathways.
Main Results:
- CINDELA demonstrated selective killing of human cancer cell lines in vitro.
- The strategy effectively eradicated xenograft human tumors in mice.
- CINDELA showed efficacy in patient-derived glioblastoma and lung cancer xenograft models.
- No adverse effects were observed in healthy human cells or on mouse growth.
Conclusions:
- CINDELA represents a novel and effective strategy for cancer therapy by leveraging CRISPR-mediated DSBs.
- The approach offers high specificity, targeting cancer cells while sparing normal tissues.
- This proof-of-concept study validates CINDELA's potential for clinical translation in treating various cancers.
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