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Updated: Oct 2, 2025

Comparative Proteomic Analysis of Whole Kidney, Medulla, and Cortical Tubules in Diabetic Pathogenesis of Kidney Injury in Mice
Published on: May 2, 2025
Advances in proteomic profiling of pediatric kidney diseases
Timothy D Cummins1, Erik A Korte2, Sagar Bhayana3
1Division of Nephrology and Hypertension, Clinical Proteomics Center, University of Louisville School of Medicine, 570 S. Preston St, Louisville, KY, 40202, USA. timothy.cummins@louisville.edu.
Insights
Early detection of chronic kidney disease (CKD) using proteomics offers better outcomes for all ages. Proteomic biomarkers aid in diagnosing and understanding kidney damage, improving treatment strategies.
Area of Science:
- Nephrology
- Biochemistry
- Proteomics
Background:
- Chronic kidney disease (CKD) progression leads to kidney failure, impacting both pediatric and adult patients.
- CKD is associated with significant comorbidities like cardiovascular disease and hypertension.
- Distinguishing glomerular pathologies in CKD pathogenesis is challenging with current clinical markers.
Purpose of the Study:
- To review the application of proteomics in identifying novel biomarkers for early diagnosis and prognosis of CKD.
- To highlight how proteomic analysis advances understanding of kidney damage mechanisms in adults and children.
- To emphasize the potential of proteomics in improving clinical tools for pediatric kidney disease treatment.
Main Methods:
- Review of current literature on proteomics and mass spectrometry in CKD research.
- Analysis of proteomic applications for identifying diagnostic and prognostic biomarkers.
- Comparison of proteomic challenges and advances in adult and pediatric CKD populations.
Main Results:
- Proteomics has identified key biomarkers such as PLA2R, SEMA3B, KIM-1, MCP-1, and NGAL.
- These biomarkers aid in diagnosing conditions like membranous nephropathy and lupus nephritis.
- Proteomic findings in adults are transferable to advancing pediatric CKD knowledge.
Conclusions:
- Proteomics is a powerful tool for early CKD detection and mechanistic understanding.
- Biomarker discovery through proteomics can significantly improve diagnosis and prognosis.
- Advancements in proteomic applications hold great promise for better management of pediatric kidney diseases.
Abstract:
Chronic kidney disease (CKD) can progress to kidney failure and require dialysis or transplantation, while early diagnosis can alter the course of disease and lead to better outcomes in both pediatric and adult patients. Significant CKD comorbidities include the manifestation of cardiovascular disease, heart failure, coronary disease, and hypertension. The pathogenesis of chronic kidney diseases can present as subtle and especially difficult to distinguish between different glomerular pathologies. Early detection of adult and pediatric CKD and detailed mechanistic understanding of the kidney damage can be helpful in delaying or curtailing disease progression via precise intervention toward diagnosis and prognosis. Clinically, serum creatinine and albumin levels can be indicative of CKD, but often are a lagging indicator only significantly affected once kidney function has severely diminished. The evolution of proteomics and mass spectrometry technologies has begun to provide a powerful research tool in defining these mechanisms and identifying novel biomarkers of CKD. Many of the same challenges and advances in proteomics apply to adult and pediatric patient populations. Additionally, proteomic analysis of adult CKD patients can be transferred directly toward advancing our knowledge of pediatric CKD as well. In this review, we highlight applications of proteomics that have yielded such biomarkers as PLA2R, SEMA3B, and other markers of membranous nephropathy as well as KIM-1, MCP-1, and NGAL in lupus nephritis among other potential diagnostic and prognostic markers. The potential for improving the clinical toolkit toward better treatment of pediatric kidney diseases is significantly aided by current and future development of proteomic applications.
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