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Updated: Oct 2, 2025

A Microfluidic Platform to Study Bioclogging in Porous Media
Published on: October 13, 2022
Controlling pore-scale processes to tame subsurface biomineralization.
Joaquin Jimenez-Martinez1,2, Jen Nguyen3,4, Dani Or5
1Department of Water Resources and Drinking Water, Eawag, Dübendorf, Switzerland.
Microbial biomineralization in porous media is controlled by physical and chemical factors within heterogeneous microenvironments. Understanding these pore-scale processes enhances predictions for natural systems and technological applications.
Area of Science:
- Geology
- Microbiology
- Environmental Science
Background:
- Microorganisms catalyze mineral precipitation by altering local conditions.
- Microbial biomineralization occurs in heterogeneous porous media like soil and rock.
- Pore-scale structures and microbial activity create strong local gradients.
Purpose of the Study:
- Review pore-scale processes controlling extracellular bacterial biomineralization.
- Analyze how physical, chemical, and ecological factors integrate to control biomineralization.
- Enhance understanding of microbial behavior in heterogeneous microenvironments.
Main Methods:
- Literature review focusing on pore-scale processes.
- Analysis of factors influencing spatial and temporal control of biomineralization.
- Integration of physical, chemical, and ecological factors.
Main Results:
- Extracellular bacterial biomineralization is sensitive to external heterogeneity.
- Individual factors and their integration dictate biomineralization control.
- Quantitative understanding requires considering microenvironmental heterogeneity.
Conclusions:
- Improved understanding of microbial behavior in heterogeneous microenvironments is crucial.
- This knowledge advances natural system comprehension and technological applications.
- Future work should build on existing tools for better predictability in biomineralization science and technology.
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