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Updated: Oct 2, 2025

Analysis of Human T Cell Activity in an Allogeneic Co-Culture Setting of Pre-Treated Tumor Cells
Published on: March 7, 2025
T Cell Recognition of Tumor Neoantigens and Insights Into T Cell Immunotherapy
Malcolm J W Sim1, Peter D Sun1
1Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health (NIH), Rockville, MD, United States.
Abstract:
In cancer, non-synonymous DNA base changes alter protein sequence and produce neoantigens that are detected by the immune system. For immune detection, neoantigens must first be presented on class I or II human leukocyte antigens (HLA) followed by recognition by peptide-specific receptors, exemplified by the T-cell receptor (TCR). Detection of neoantigens represents a unique challenge to the immune system due to their high similarity with endogenous 'self' proteins. Here, we review insights into how TCRs detect neoantigens from structural studies and delineate two broad mechanistic categories: 1) recognition of mutated 'self' peptides and 2) recognition of novel 'non-self' peptides generated through anchor residue modifications. While mutated 'self' peptides differ only by a single amino acid from an existing 'self' epitope, mutations that form anchor residues generate an entirely new epitope, hitherto unknown to the immune system. We review recent structural studies that highlight these structurally distinct mechanisms and discuss how they may lead to differential anti-tumor immune responses. We discuss how T cells specific for neoantigens derived from anchor mutations can be of high affinity and provide insights to their use in adoptive T cell transfer-based immunotherapy.
Insights
Cancer neoantigens are detected by T-cell receptors (TCRs) through two main mechanisms: mutated self-peptides and novel non-self-peptides from anchor mutations. Anchor mutations generate high-affinity TCRs for potential cancer immunotherapy.
Area of Science:
- Immunology
- Oncology
- Structural Biology
Background:
- Cancer cells acquire non-synonymous DNA mutations, leading to altered proteins and neoantigens.
- Neoantigens are presented by human leukocyte antigens (HLA) and recognized by T-cell receptors (TCRs).
- Distinguishing neoantigens from self-proteins poses a challenge for the immune system.
Purpose of the Study:
- To review structural insights into how TCRs detect cancer neoantigens.
- To delineate mechanistic categories of neoantigen recognition by TCRs.
- To discuss the implications for anti-tumor immune responses and immunotherapy.
Main Methods:
- Review of structural studies on TCR-neoantigen interactions.
- Categorization of neoantigen recognition mechanisms.
- Analysis of structural differences between mutated self-peptides and anchor-modified peptides.
Main Results:
- Two primary TCR recognition mechanisms for neoantigens identified: mutated self-peptides and novel non-self-peptides via anchor residue modifications.
- Mutated self-peptides differ by a single amino acid from self-epitopes.
- Anchor residue modifications create entirely new, previously unrecognized epitopes.
Conclusions:
- Structural differences in neoantigen recognition mechanisms may influence anti-tumor immune responses.
- T-cells specific for anchor-mutation-derived neoantigens can exhibit high affinity.
- These findings offer insights for developing adoptive T-cell transfer immunotherapies targeting cancer.
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