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A hybrid ensemble and evolutionary algorithm for imbalanced classification and its application on bioinformatics.

Yongqing Zhang1, Meng Lin2, Yihan Yang3

  • 1School of Computer Science, Chengdu University of Information Technology, Chengdu 610225, China; School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu 610054, China.

Computational Biology and Chemistry
|March 3, 2022
PubMed
Summary
This summary is machine-generated.

A new Hybrid Adaptive sampling with Bagging Classifier (HABC) method addresses imbalanced data classification by adaptively sampling data. Experiments show HABC outperforms existing state-of-the-art algorithms.

Keywords:
BioinformaticsEnsemble learningEvolutionary algorithmImbalanced classification

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Area of Science:

  • Data Mining
  • Machine Learning
  • Bioinformatics

Background:

  • Imbalanced data classification is a core challenge in data mining.
  • Existing methods like random under-sampling and ensemble learning have limitations.
  • Random under-sampling may discard crucial data, while ensemble methods often ignore data correlations.

Purpose of the Study:

  • To introduce a novel Hybrid Adaptive sampling with Bagging Classifier (HABC) for improved imbalanced data classification.
  • To address the shortcomings of existing sampling and ensemble techniques.

Main Methods:

  • Calculated adaptive sampling rates based on dataset characteristics.
  • Applied density-based under-sampling and over-sampling.
  • Integrated sampled data subsets with a Bagging classifier for prediction.
  • Utilized multi-objective particle swarm optimization to enhance prediction accuracy.

Main Results:

  • The proposed HABC method demonstrated superior performance compared to state-of-the-art algorithms.
  • Experiments were conducted on benchmark datasets (UCI, KEEL) and bioinformatics datasets.
  • HABC effectively handles imbalanced data by preserving representative samples and utilizing data correlations.

Conclusions:

  • HABC offers a robust and effective solution for imbalanced data classification problems.
  • The adaptive sampling strategy combined with ensemble learning and optimization significantly improves classification outcomes.
  • The method shows promise for applications in data mining and bioinformatics.