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Updated: Oct 1, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
DNA repair and immune checkpoint blockade response
Jimmy A Guo1, Mohammed Alshalalfa2, Daniel Y Kim3
1Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Abstract:
Immune checkpoint blockade (ICB) has shown immense promise for treating patients with various cancer types, but its effectiveness relies on our ability to identify likely responders. Here, we examined the association between mutations in 25 core DNA repair genes and ICB outcomes in 6619 patients across 9 cancer types with advanced disease and MSK-IMPACT tumor sequencing. Notably, we observed that mutations in 7 of the DNA repair genes (ATM, ATR, POLE, ERCC4, NBN, RAD50, PARP1) were significantly associated with improved overall survival in ICB-treated patients (p < 0.05 for all) and had significant interaction with treatment (pinteraction <0.05 for all). Similarly, DNA repair mutations were enriched in other cancer types not previously assessed and primary tumors of unknown origins, suggesting that mutations could serve as a biomarker independent of cancer type. Although our cohort was enriched in certain cancer types, such as melanoma and non-small cell lung cancer, and clinically matched samples were not assessed, our study provides a robust approach in characterizing clinically-adoptable biomarkers that can select for potential ICB responders.
Insights
Mutations in specific DNA repair genes are linked to better outcomes for patients receiving immune checkpoint blockade (ICB) cancer therapy. These DNA repair gene mutations may serve as biomarkers to identify patients likely to respond to ICB treatment.
Area of Science:
- Oncology
- Genetics
- Immunotherapy
Background:
- Immune checkpoint blockade (ICB) therapy offers significant promise for cancer treatment.
- Identifying patients likely to respond to ICB is crucial for treatment efficacy.
- Tumor mutational status is increasingly recognized as a factor influencing treatment response.
Purpose of the Study:
- To investigate the association between mutations in core DNA repair genes and ICB treatment outcomes.
- To identify potential DNA repair gene mutation biomarkers for predicting ICB response across diverse cancer types.
Main Methods:
- Analysis of mutations in 25 core DNA repair genes in 6619 advanced cancer patients.
- Utilized MSK-IMPACT tumor sequencing data for comprehensive genomic profiling.
- Correlated DNA repair gene mutations with overall survival in patients receiving ICB.
Main Results:
- Mutations in 7 DNA repair genes (ATM, ATR, POLE, ERCC4, NBN, RAD50, PARP1) were significantly associated with improved overall survival in ICB-treated patients.
- A significant interaction between DNA repair gene mutations and ICB treatment was observed.
- Enrichment of DNA repair mutations was noted in various cancer types, suggesting potential as a universal biomarker.
Conclusions:
- Mutations in specific DNA repair genes can serve as predictive biomarkers for ICB therapy response.
- These findings support the development of genomic biomarkers to personalize cancer immunotherapy.
- Further validation across diverse cohorts is warranted to establish clinical utility.
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