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Related Concept Videos

Improving Translational Accuracy02:07

Improving Translational Accuracy

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Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
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Translation01:31

Translation

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Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
Proteins are...
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Leaky Scanning02:28

Leaky Scanning

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During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
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Initiation of Translation02:33

Initiation of Translation

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Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
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Regulated mRNA Transport02:22

Regulated mRNA Transport

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In eukaryotes, transcription and translation are compartmentalized; an mRNA is first synthesized in the nucleus and then selectively transported to the cytoplasm for protein synthesis. Before transport, a pre-mRNA undergoes several steps of post-transcriptional modifications including splicing, 5' capping, and the addition of a poly-adenine tail. Various proteins bind to the pre-mRNA during these modifications. The mRNA transport takes place with the help of multiple proteins playing...
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Cotranslational Protein Translocation01:20

Cotranslational Protein Translocation

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Translocation of proteins across membranes is an ancient process that occurs even in bacteria and archaebacteria. In fact, the components of the translocation machinery are still conserved between prokaryotes and eukaryotes.
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
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Constructing and Visualizing Models using Mime-based Machine-learning Framework
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Challenges in translational machine learning.

Artuur Couckuyt1,2, Ruth Seurinck1,2, Annelies Emmaneel1,2

  • 1Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Gent, Belgium.

Human Genetics
|March 5, 2022
PubMed
Summary
This summary is machine-generated.

Translational machine learning (ML) bridges data science and clinical practice by fostering collaboration. This approach enhances trust and reproducibility in ML models for clinical decision support systems.

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Area of Science:

  • Biomedical Informatics
  • Clinical Decision Support
  • Machine Learning

Background:

  • Machine learning (ML) algorithms are increasingly integrated into clinical decision support systems.
  • Bridging the gap between ML development and clinical adoption requires a specialized approach.

Purpose of the Study:

  • To define and review the field of "translational machine learning" (translational ML).
  • To provide guidance for clinicians and bioinformaticians in developing and implementing translational ML pipelines.
  • To highlight challenges and best practices in applying ML within clinical settings.

Main Methods:

  • Review of key steps in translational ML pipelines, from model building to clinical implementation.
  • Discussion of experimental setup, computational analysis, interpretability, and reproducibility.
  • Emphasis on collaborative efforts and data sharing.

Main Results:

  • Joint efforts and strong communication between data scientists and clinicians are crucial for successful translational ML.
  • Collaboration improves the interpretability and trustworthiness of ML models.
  • Multi-centric cohorts and data sharing facilitate the development of generalizable and reproducible ML models.

Conclusions:

  • Translational ML aims to streamline the adoption of ML in clinics, improving decision support.
  • Addressing challenges in interpretability, reproducibility, and generalization is key.
  • Collaboration and data sharing are essential for advancing translational ML and its clinical impact.