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Updated: Oct 1, 2025

Multiplex PCR Assay for Typing of Staphylococcal Cassette Chromosome Mec Types I to V in Methicillin-resistant Staphylococcus aureus
Published on: September 5, 2013
Characterization of SCCmec Instability in Methicillin-Resistant Staphylococcus aureus Affecting Adjacent Chromosomal
C R Scharn1, I A Tickler2, F C Tenover2
1Department of Medical Microbiology and Immunology, Creighton University School of Medicine, Omaha, Nebraska, USA.
Abstract:
Staphylococcal cassette chromosome mec (SCCmec) represents a sequence of clear clinical and diagnostic importance in staphylococci. At a minimum the chromosomal cassette contains the mecA gene encoding PBP2a but frequently also includes additional antibiotic resistance genes (e.g., ermA and aadC; macrolide and aminoglycoside resistance, respectively). Certain regions within SCCmec elements are hot spots for sequence instability due to cassette-specific recombinases and a variety of internal mobile elements. SCCmec changes may affect not only cassette stability but the integrity of adjacent chromosomal sequences (e.g., the staphylococcal protein A gene; spa). We investigated SCCmec stability in methicillin-resistant Staphylococcus aureus (MRSA) strains carrying one of four SCCmec types cultured in the absence of antimicrobial selection over a 3-month period. SCCmec rearrangements were first detected in cefoxitin-susceptible variants after 2 months of passage, and most commonly showed precise excision of the SCCmec element. Sequence analysis after 3 months revealed both precise SCCmec excision and a variety of SCCmec internal deletions, some including extensive adjacent chromosomal loss, including spa. No empty cassettes (i.e., loss of just mecA from SCCmec) were observed among the variants. SCCmec stability was influenced both by internal mobile elements (IS431) as well as the host cell environment. Genotypically similar clinical isolates with deletions in the spa gene were also included for purposes of comparison. The results indicate a role for host-cell influence and the IS431 element on SCCmec stability.
Insights
Staphylococcal cassette chromosome mec (SCCmec) stability in MRSA strains was investigated. SCCmec rearrangements, including precise excision and internal deletions, occurred over 3 months, influenced by mobile elements and host cell environment.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Staphylococcal cassette chromosome mec (SCCmec) is crucial in staphylococci, containing the mecA gene for methicillin resistance.
- SCCmec elements can be unstable, with internal mobile elements and recombinases causing rearrangements.
- SCCmec alterations may impact adjacent chromosomal sequences, such as the staphylococcal protein A (spa) gene.
Purpose of the Study:
- To investigate the stability of SCCmec in methicillin-resistant Staphylococcus aureus (MRSA) strains.
- To determine the impact of culturing without antimicrobial selection on SCCmec integrity.
- To identify factors influencing SCCmec stability, including mobile elements and host cell environment.
Main Methods:
- MRSA strains with four different SCCmec types were cultured without antimicrobial selection for 3 months.
- Cefoxitin susceptibility was monitored as an indicator of SCCmec rearrangements.
- Sequence analysis was performed to characterize SCCmec alterations and adjacent chromosomal changes.
Main Results:
- SCCmec rearrangements were detected in cefoxitin-susceptible variants after 2 months.
- The most common rearrangement was precise excision of the entire SCCmec element.
- Internal SCCmec deletions, some involving loss of the spa gene, were observed after 3 months.
- No loss of only the mecA gene (empty cassettes) was detected.
Conclusions:
- SCCmec stability is influenced by internal mobile elements like IS431 and the host cell environment.
- SCCmec rearrangements, including precise excision and deletions, can occur even without antibiotic pressure.
- These findings highlight the dynamic nature of SCCmec and its potential impact on the staphylococcal genome.
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