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Using network pharmacology approaches to identify treatment mechanisms for codonopsis in esophageal cancer
1Public Course Teaching Department, Cangzhou Medical College Cangzhou 061000, Hebei, China.
Objective:
We explored codonopsis mechanisms for the treatment of esophageal cancer using a network pharmacology approach.
Materials And Methods:
Using the Laboratory of Systems Pharmacology website, codonopsis compounds and targets were gathered. After identifying esophageal cancer target intersections from the GeneCards website, possible codonopsis targets for esophageal cancer were screened. A protein-protein interaction (PPI) network diagram of protein targets was then constructed using the STRING database. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genome (KEGG) pathway enrichment analyses were performed in R 3.6.0 software. A network diagram of "disease-drug-component-target-pathways" was also constructed using Cytoscape 3.7.1.
Results:
We screened 21 codonopsis compounds as possible esophageal cancer treatments and 31 drug-disease intersecting targets. GO enrichment analysis identified 778 biological process (BP) components, 15 cellular component (CC) components, and 50 molecular function (MF) components, and KEGG analyses identified 90 signaling pathways. Our analyses showed that p53 and PI3K-Akt signaling pathways (among others) were significant pathways in these processes.
Conclusions:
Codonopsis may be used to treat esophageal cancer by multiple components, targets, and pathways.
Insights
Codonopsis shows potential for treating esophageal cancer through multiple compounds, targets, and pathways. This network pharmacology study identified key signaling pathways, including p53 and PI3K-Akt, for further investigation.
Area of Science:
- Pharmacology
- Computational Biology
- Oncology
Background:
- Esophageal cancer presents a significant global health challenge.
- Traditional medicine, including Codonopsis, offers potential therapeutic avenues.
- Network pharmacology provides a systems-level approach to understanding drug mechanisms.
Purpose of the Study:
- To elucidate the therapeutic mechanisms of Codonopsis for esophageal cancer using network pharmacology.
- To identify key compounds, targets, and pathways involved in Codonopsis-based esophageal cancer treatment.
Main Methods:
- Gathered Codonopsis compounds and targets from the Laboratory of Systems Pharmacology.
- Identified esophageal cancer targets and screened potential Codonopsis targets using GeneCards.
- Constructed protein-protein interaction networks and performed Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses.
Main Results:
- Screened 21 Codonopsis compounds and identified 31 drug-disease intersecting targets.
- GO enrichment analysis revealed numerous biological processes, cellular components, and molecular functions.
- KEGG analysis identified 90 signaling pathways, highlighting the significance of p53 and PI3K-Akt signaling pathways.
Conclusions:
- Codonopsis exhibits potential for treating esophageal cancer through a multi-component, multi-target, and multi-pathway approach.
- The identified pathways provide a basis for further experimental validation and drug development.
- Network pharmacology is a valuable tool for exploring the complex mechanisms of traditional medicines.
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