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Updated: Sep 30, 2025

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
Crystal structures of TTHA1265 and TTHA1264/TTHA1265 complex reveal an intrinsic heterodimeric assembly
Mengxue Xu1, Qin Xu2, Meitian Wang3
1Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China.; Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, 210095 Nanjing, China.
Abstract:
Zinc peptidase M16 family members are widely distributed in most prokaryotic and eukaryotic organisms. M16 family has been divided into three subfamilies, M16A, M16B and M16C, based on sequence alignments and subunit connectivity. TTHA1264, an M16B protein found in Thermus thermophiles HB8, possesses an HXXEH motif essential for Zn2+ binding and catalytic activity. TTHA1265 is another member of M16B, which lacks the metal-binding motif but with a conserved active-site R/Y pair commonly found in the C-terminal half of M16 enzymes. Sequence analysis showed that two genes coding for TTHA1264 and TTHA1265 assemble into a single operon in the bacterial genome. Here, we report the crystal structure of TTHA1265 and TTHA1264/TTHA1265 complex from T. thermophilus HB8. Interestingly, when TTHA1264 and TTHA1265 are present alone, TTHA1264 forms a monomer, TTHA1265 forms a homodimer, respectively. However, TTHA264 and TTHA1265 assembled into a heterodimeric complex, indicating that they prefer to form heterodimer. Biochemical data further confirmed the heterodimeric assembly indicating intrinsic heterodimeric assembly of TTHA1264 and TTHA1265. This property of TTHA1264 and TTHA1265 is consistent with the characteristics of the M16B family.
Insights
The M16B family zinc peptidases TTHA1264 and TTHA1265 from Thermus thermophilus HB8 preferentially form heterodimers. This structural finding reveals a unique assembly mechanism for these bacterial enzymes.
Area of Science:
- Biochemistry
- Structural Biology
- Microbiology
Background:
- The M16 family of zinc peptidases is crucial in various organisms.
- This family is classified into M16A, M16B, and M16C subfamilies.
- TTHA1264 contains a key metal-binding motif, while TTHA1265 has a conserved active-site residue.
Purpose of the Study:
- To elucidate the crystal structure of TTHA1265 and the TTHA1264/TTHA1265 complex.
- To investigate the assembly properties of TTHA1264 and TTHA1265.
Main Methods:
- X-ray crystallography
- Protein expression and purification
- Biochemical assays
Main Results:
- TTHA1264 forms a monomer and TTHA1265 forms a homodimer in isolation.
- TTHA1264 and TTHA1265 assemble into a stable heterodimeric complex.
- Biochemical data confirm the intrinsic preference for heterodimerization.
Conclusions:
- TTHA1264 and TTHA1265 exhibit a strong preference for forming heterodimers.
- This heterodimeric assembly is consistent with the known characteristics of the M16B subfamily.
- The findings provide structural insights into M16B enzyme function.
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