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Updated: Sep 30, 2025

Production, Crystallization, and Structure Determination of the IKK-binding Domain of NEMO
Published on: December 28, 2019
Crystal structure of the human MUS81-EME2 complex
Zhengkang Hua1, Qianqian Fang1, Danping Zhang1
1College of Chemistry, Fuzhou University, Fuzhou 350108, China.
Abstract:
MUS81 is an important structure-specific endonuclease responsible for the processing of stalled replication forks and recombination intermediates. In human, MUS81 functions by forming complexes with its regulatory subunits EME1 and EME2, playing distinct roles in G2/M and S phases. Although the structures of MUS81-EME1 have been intensively studied, there is no structure information available about MUS81-EME2. Here, we report the crystal structure of MUS81-EME2, which reveals an overall protein fold similar to that of MUS81-EME1 complex. Further biochemical and structural characterization shows that the MUS81-EME1 and MUS81-EME2 complexes are identical in substrate recognition and endonuclease activities in vitro, implying that the distinct cellular roles of the two complexes could arise from temporal controls in cells. Finally, an extensive structure-guided mutagenesis analysis provides implications for the molecular basis of how the MUS81-EME endonucleases recognize various DNA substrates in a structure-selective manner.
Insights
The crystal structure of the MUS81-EME2 complex was determined, revealing similarities to MUS81-EME1. Biochemical studies show both complexes have identical DNA processing activities, suggesting cellular timing dictates their distinct roles.
Area of Science:
- Molecular biology
- Structural biology
- Biochemistry
Background:
- MUS81 is a crucial structure-specific endonuclease involved in DNA repair.
- In humans, MUS81 forms complexes with EME1 and EME2, with distinct roles in cell cycle phases.
- The structure of MUS81-EME1 is known, but MUS81-EME2 remains uncharacterized.
Purpose of the Study:
- To determine the crystal structure of the human MUS81-EME2 complex.
- To compare the biochemical activities and substrate recognition of MUS81-EME1 and MUS81-EME2 complexes.
- To elucidate the structural basis for DNA substrate recognition by MUS81-EME endonucleases.
Main Methods:
- X-ray crystallography to determine the MUS81-EME2 structure.
- Biochemical assays to assess endonuclease activity and substrate specificity.
- Structure-guided mutagenesis to investigate DNA binding interactions.
Main Results:
- The crystal structure of MUS81-EME2 was solved, showing a fold similar to MUS81-EME1.
- In vitro biochemical assays demonstrated identical substrate recognition and endonuclease activities for both MUS81-EME1 and MUS81-EME2 complexes.
- Structure-guided mutagenesis provided insights into the molecular mechanisms of DNA substrate binding.
Conclusions:
- The structural similarity and identical in vitro activities suggest that the distinct cellular functions of MUS81-EME1 and MUS81-EME2 complexes are likely regulated by temporal controls within the cell.
- This study provides a structural foundation for understanding how MUS81-EME endonucleases recognize diverse DNA structures.
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