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Updated: Sep 30, 2025

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Functional characterization of the human Cdk10/Cyclin Q complex
Robert Düster1, Yanlong Ji2,3,4, Kuan-Ting Pan3,4
1Institute of Structural Biology, University of Bonn, Venusberg-Campus 1, 53127 Bonn, Germany.
Abstract:
Cyclin-dependent kinases (CDKs) are key players in cell cycle regulation and transcription. The CDK-family member Cdk10 is important for neural development and can act as a tumour suppressor, but the underlying molecular mechanisms are largely unknown. Here, we provide an in-depth analysis of Cdk10 substrate specificity and function. Using recombinant Cdk10/CycQ protein complexes, we characterize RNA pol II CTD, c-MYC and RB1 as in vitro protein substrates. Using an analogue-sensitive mutant kinase, we identify 89 different Cdk10 phosphosites in HEK cells originating from 66 different proteins. Among these, proteins involved in cell cycle, translation, stress response, growth signalling, as well as rRNA, and mRNA transcriptional regulation, are found. Of a set of pan-selective CDK- and Cdk9-specific inhibitors tested, all inhibited Cdk10/CycQ at least five times weaker than their proposed target kinases. We also identify Cdk10 as an in vitro substrate of Cdk1 and Cdk5 at multiple sites, allowing for a potential cross-talk between these CDKs. With this functional characterization, Cdk10 adopts a hybrid position in both cell cycle and transcriptional regulation.
Insights
Cyclin-dependent kinase 10 (Cdk10) regulates cell cycle and transcription. This study identifies its substrates and phosphosites, revealing its role in neural development and tumor suppression.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Cyclin-dependent kinases (CDKs) are crucial regulators of cell cycle and transcription.
- Cdk10's role in neural development and tumor suppression is established, but its molecular mechanisms remain unclear.
Purpose of the Study:
- To elucidate the substrate specificity and function of Cdk10.
- To identify novel Cdk10 substrates and regulatory interactions.
Main Methods:
- Recombinant Cdk10/CycQ protein complex used for in vitro substrate characterization.
- Analogue-sensitive mutant kinase employed to identify in vivo phosphosites in HEK cells.
- In vitro kinase assays to assess inhibition by CDK inhibitors and cross-phosphorylation by other CDKs.
Main Results:
- Cdk10 phosphorylates RNA pol II CTD, c-MYC, and RB1 in vitro.
- Identified 89 Cdk10 phosphosites on 66 proteins involved in cell cycle, translation, stress response, growth signaling, and transcriptional regulation.
- Cdk10 is a substrate of Cdk1 and Cdk5, suggesting cross-talk between these kinases.
Conclusions:
- Cdk10 plays a hybrid role in both cell cycle and transcriptional regulation.
- This functional characterization provides insights into Cdk10's involvement in neural development and tumor suppression.
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