Deubiquitinase Vulnerabilities Identified through Activity-Based Protein Profiling in Non-Small Cell Lung Cancer
Abstract:
To aid in the prioritization of deubiquitinases (DUBs) as anticancer targets, we developed an approach combining activity-based protein profiling (ABPP) with mass spectrometry in both non-small cell lung cancer (NSCLC) tumor tissues and cell lines along with analysis of available RNA interference and CRISPR screens. We identified 67 DUBs in NSCLC tissues, 17 of which were overexpressed in adenocarcinoma or squamous cell histologies and 12 of which scored as affecting lung cancer cell viability in RNAi or CRISPR screens. We used the CSN5 inhibitor, which targets COPS5/CSN5, as a tool to understand the biological significance of one of these 12 DUBs, COPS6, in lung cancer. Our study provides a powerful resource to interrogate the role of DUB signaling biology and nominates druggable targets for the treatment of lung cancer subtypes.
Insights
Researchers identified key deubiquitinases (DUBs) in non-small cell lung cancer (NSCLC) using activity-based protein profiling and genetic screens. This work highlights potential new drug targets for treating lung cancer subtypes.
Area of Science:
- Oncology
- Biochemistry
- Proteomics
Background:
- Deubiquitinases (DUBs) play crucial roles in cellular processes and are implicated in cancer development.
- Identifying specific DUBs involved in non-small cell lung cancer (NSCLC) is essential for developing targeted therapies.
Purpose of the Study:
- To prioritize deubiquitinases (DUBs) as potential anticancer targets in non-small cell lung cancer (NSCLC).
- To identify DUBs that are overexpressed or essential for the viability of NSCLC cells.
Main Methods:
- Combined activity-based protein profiling (ABPP) with mass spectrometry on NSCLC tumor tissues and cell lines.
- Analyzed existing RNA interference (RNAi) and CRISPR screening data for lung cancer.
- Utilized a COPS5/CSN5 inhibitor to investigate the role of COPS6 in lung cancer.
Main Results:
- Identified 67 DUBs in NSCLC tissues.
- Found 17 DUBs overexpressed in specific NSCLC histologies (adenocarcinoma or squamous cell).
- Highlighted 12 DUBs affecting lung cancer cell viability in genetic screens, including COPS6.
Conclusions:
- The study provides a valuable resource for understanding DUB signaling in lung cancer.
- Nominates specific DUBs, such as COPS6, as druggable targets for NSCLC treatment.
- Offers a strategic approach for prioritizing anticancer targets in specific cancer subtypes.
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