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Updated: Sep 29, 2025

System for Efficacy and Cytotoxicity Screening of Inhibitors Targeting Intracellular Mycobacterium tuberculosis
Published on: April 5, 2017
A selective PPM1A inhibitor activates autophagy to restrict the survival of Mycobacterium tuberculosis
Stefania Berton1, Lu Chen2, Yi Chu Liang1
1Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON K1H 8M5, Canada.
Abstract:
Metal-dependent protein phosphatases (PPMs) have essential roles in a variety of cellular processes, including inflammation, proliferation, differentiation, and stress responses, which are intensively investigated in cancer and metabolic diseases. Targeting PPMs to modulate host immunity in response to pathogens is an ambitious proposition. The feasibility of such a strategy is unproven because development of inhibitors against PPMs is challenging and suffers from poor selectivity. Combining a biomimetic modularization strategy with function-oriented synthesis, we design, synthesize and screen more than 500 pseudo-natural products, resulting in the discovery of a potent, selective, and non-cytotoxic small molecule inhibitor for PPM1A, SMIP-30. Inhibition of PPM1A with SMIP-30 or its genetic ablation (ΔPPM1A) activated autophagy through a mechanism dependent on phosphorylation of p62-SQSTM1, which restricted the intracellular survival of Mycobacterium tuberculosis in macrophages and in the lungs of infected mice. SMIP-30 provides proof of concept that PPMs are druggable and promising targets for the development of host-directed therapies against tuberculosis.
Insights
Researchers developed SMIP-30, a selective inhibitor targeting metal-dependent protein phosphatases (PPMs), specifically PPM1A. This discovery offers a new strategy for host-directed tuberculosis therapy by enhancing immune responses.
Area of Science:
- Immunology and Microbiology
- Molecular and Cellular Biology
- Drug Discovery and Development
Background:
- Metal-dependent protein phosphatases (PPMs) are crucial in cellular processes like inflammation and immunity.
- Targeting PPMs for pathogen defense is promising but hindered by challenges in inhibitor development and selectivity.
- Tuberculosis (TB) remains a significant global health challenge, necessitating novel therapeutic approaches.
Purpose of the Study:
- To design and identify selective inhibitors for PPMs as a potential host-directed therapy against tuberculosis.
- To investigate the mechanism by which PPM inhibition affects host immunity and intracellular pathogen survival.
Main Methods:
- Employed a biomimetic modularization strategy and function-oriented synthesis to create over 500 pseudo-natural products.
- Screened compounds to discover a potent, selective, and non-cytotoxic inhibitor of PPM1A, named SMIP-30.
- Utilized genetic ablation (ΔPPM1A) and SMIP-30 treatment to study the effects on autophagy and Mycobacterium tuberculosis survival in macrophages and mouse models.
Main Results:
- Identified SMIP-30, a highly selective small molecule inhibitor of PPM1A.
- Inhibition of PPM1A (using SMIP-30 or genetic knockout) activated autophagy via p62-SQSTM1 phosphorylation.
- Activated autophagy restricted the intracellular survival of Mycobacterium tuberculosis in macrophages and in mouse lungs.
Conclusions:
- PPM1A is a druggable target for modulating host immunity against tuberculosis.
- SMIP-30 demonstrates proof of concept for PPMs as promising targets for host-directed anti-TB therapies.
- This study opens avenues for developing novel therapeutic strategies against infectious diseases by targeting host phosphatases.
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