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Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Protein Structure Readouts of Cancer Drivers for Precision Medicine
Jaspreet Kaur Dhanjal1, Rajkumar Singh Kalra2
1Indraprastha Institute of Information Technology Delhi, Okhla Industrial Estate, Phase III, New Delhi 110 020, India.
Abstract:
Cancer is fundamentally a disease of perturbed genes. Although many mutations can be marked in the genome of cancer or a transformed cell, the initiation and progression are driven by only a few mutational events, viz., driver mutations that progressively govern and execute the functional impacts. The driver mutations are thus believed to dictate and dysregulate the subsequent cellular proliferative function/decisions, thereby producing a cancerous state. Therefore, identifying the driver events from the genomic alterations in a patient's cancer cell gained enormous attention recently for designing better targeting therapies and paving the way for precision cancer medicine. With rolling advancements in high-throughput omic technologies, analysis of genetic variations and gene expression profiles for cancer patients has become a routine clinical practice. However, it is anticipated that protein structural alterations resulting from such driver mutations can provide more direct and clinically relevant evidence of disease states than genetic signatures alone. This review comprehensively discusses various aspects and approaches that have been developed for the prediction of cancer drivers using genetic signatures and protein structures and their potential application in developing precision cancer therapies.
Insights
Identifying cancer driver mutations is key for precision medicine. This review explores using genetic and protein structural data to predict drivers for targeted cancer therapies.
Area of Science:
- Oncology
- Genomics
- Structural Biology
Background:
- Cancer arises from genetic mutations, with a few 'driver' mutations initiating and progressing the disease.
- Identifying these driver mutations is crucial for developing targeted cancer therapies and advancing precision medicine.
- While genetic analysis is common, protein structural changes offer potentially more direct disease indicators.
Purpose of the Study:
- To review methods for predicting cancer drivers using genetic and protein structural data.
- To discuss the application of driver prediction in precision cancer therapy development.
Main Methods:
- Review of existing literature on cancer driver prediction.
- Analysis of approaches utilizing genetic signatures (mutations, gene expression).
- Exploration of methods incorporating protein structure alterations.
Main Results:
- Driver mutations dictate cancer progression and cellular function.
- High-throughput omics technologies enable routine genetic analysis in cancer patients.
- Protein structural alterations may provide more clinically relevant evidence than genetic data alone.
Conclusions:
- Predicting cancer drivers from genetic and structural data is vital for precision oncology.
- Integrating genetic and structural information can enhance the development of targeted cancer therapies.
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