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Updated: Sep 29, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
The gut microbiome as mediator between diet and its impact on immune function
Huiqing Shi1, Rob Ter Horst2, Suzanne Nielen3
1Department of Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen Medical Centre, Radboudumc, Kapittelweg 29, 6525 EN, Nijmegen, Gelderland, The Netherlands. Huiqing.Shi@radboudumc.nl.
Healthy eating patterns, like a prudent diet, are linked to lower inflammation markers. High alcohol and meat consumption correlate with increased inflammation, with the gut microbiome playing a mediating role in these diet-immune system interactions.
Area of Science:
- Human health
- Immunology
- Microbiology
Background:
- Dietary habits significantly influence human inflammatory status.
- The gut microbiome (GM) processes dietary components and modulates the immune system, suggesting a mediating role in diet-inflammation relationships.
Purpose of the Study:
- To investigate the association between dietary patterns and inflammatory biomarkers.
- To explore the mediating role of the gut microbiome in diet-immune system interactions.
Main Methods:
- Cross-sectional analysis of 482 healthy participants.
- Dietary intake assessed via food questionnaires; inflammatory mediators and adipokines measured using immunoassays and ELISA.
- Gut microbiome composition analyzed from stool samples; statistical analyses included polychoric correlations, regression, and non-parametric entropy mediation.
Main Results:
- Three dietary patterns identified: 'high-meat', 'prudent diet', and 'high alcohol'.
- Prudent diet associated with higher adiponectin; high alcohol diet linked to increased pro-inflammatory markers (CRP, IL-6, VEGF).
- The gut bacterium Dialister invisus mediated the relationship between prudent diet and several immune biomarkers.
Conclusions:
- Dietary patterns impact chronic low-grade inflammation biomarkers; prudent diets show anti-inflammatory effects.
- The gut microbiome partially mediates the association between diet and immune function.
- Findings highlight the interplay between diet, gut microbiome, and immune system in maintaining health.
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