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Updated: Sep 28, 2025

Using Phage Display to Develop Ubiquitin Variant Modulators for E3 Ligases
Published on: August 27, 2021
Design, synthesis and activity study of a novel PI3K degradation by hijacking VHL E3 ubiquitin ligase
Haili Wang1, Chuchu Li1, Xiaoqing Liu2
1Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China.
Abstract:
PI3K kinase plays an important role in regulating key processes in cells, such as cell growth, metabolism, proliferation, and apoptosis. The overexpression of PI3K kinase exists in many cancers. The proteolytic target chimera (PROTAC) technology is a new technology that uses the ubiquitin-proteasome system to degrade a given target protein. It has been described that CRBN-based PROTAC targets the degradation of PI3K kinase. However, PROTAC based on VHL has not been reported yet. Here, we connected the previously obtained highly active PI3K inhibitor to the VHL ligand through different small molecules, and obtained a series of PROTAC molecules targeting PI3K kinase. Obtain the most active compound through screening. It provides evidence for the feasibility of PROTAC technology to recruit VHL E3 ligase in PI3K kinase.
Insights
This study developed novel Proteolysis Targeting Chimeras (PROTACs) using the VHL E3 ligase to degrade PI3K kinase, a key protein implicated in cancer cell growth and proliferation.
Area of Science:
- Molecular Biology
- Biochemistry
- Oncology
Background:
- Phosphoinositide 3-kinase (PI3K) is crucial for cellular functions like growth, metabolism, proliferation, and apoptosis.
- Overexpression of PI3K is frequently observed in various cancers, making it a significant therapeutic target.
- Proteolytic Targeting Chimera (PROTAC) technology offers a novel approach to selectively degrade target proteins via the ubiquitin-proteasome system.
Purpose of the Study:
- To explore the development of VHL-based PROTACs targeting PI3K kinase, as previous PROTACs primarily utilized CRBN.
- To synthesize and screen a series of novel PROTAC molecules linking a PI3K inhibitor to a VHL ligand.
- To evaluate the feasibility of using VHL E3 ligase recruitment for PI3K degradation.
Main Methods:
- Design and synthesis of PROTAC molecules by conjugating a potent PI3K inhibitor with a VHL ligand via diverse linkers.
- Screening of the synthesized PROTAC library to identify compounds with high efficacy in degrading PI3K kinase.
- Biochemical assays to confirm PI3K degradation mediated by VHL-recruiting PROTACs.
Main Results:
- A series of novel VHL-based PROTACs targeting PI3K kinase were successfully synthesized.
- Screening identified a lead compound demonstrating significant PI3K degradation activity.
- The results confirm the efficacy of recruiting VHL E3 ligase for targeted PI3K degradation using PROTAC technology.
Conclusions:
- VHL-based PROTACs represent a viable strategy for the targeted degradation of PI3K kinase.
- This approach offers a promising new avenue for developing cancer therapeutics.
- Further investigation into VHL-recruiting PROTACs for PI3K inhibition is warranted.
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