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Classifying the Acquisition Sequence for Brain MRIs Using Neural Networks on Single Slices.
Norbert Braeker1, Cornelia Schmitz1, Natalie Wagner1
1Department of Radiation Oncology, Kantonsspital Winterthur, Winterthur, CHE.
Cureus
|March 29, 2022
Summary
Classifying magnetic resonance imaging (MRI) acquisition sequences using convolutional neural networks is feasible. This automated method can aid in the automatic labeling of MRI data, improving clinical applications.
Area of Science:
- Medical Imaging
- Artificial Intelligence
- Machine Learning
Background:
- Deep learning models for MRI analysis are often trained on specific acquisition parameters.
- Real-world MRI data variability hinders the clinical translation of AI research.
- Standardized acquisition sequence data is lacking in clinical practice.
Purpose of the Study:
- To evaluate the feasibility of using convolutional neural networks to classify MRI acquisition sequences from single slices.
- To assess the performance of different neural network complexities for this task.
Main Methods:
- Transfer learning was employed to train three convolutional neural networks on 113 MRI slices.
- Internal validation used 27 slices, followed by external validation on 600 slices across four sequence types.
- Performance was evaluated using categorical accuracy and confusion matrices.
Main Results:
- The neural networks achieved external validation accuracies of 0.79, 0.81, and 0.84.
- Grad-CAM analysis indicated focus on cerebrospinal fluid for T2-weighted slices.
- No distinct focus patterns were observed for other sequence types.
Conclusions:
- Automated classification of MRI acquisition sequences via neural networks is achievable.
- This technology can streamline the automatic labeling of diverse MRI datasets.
- Potential to bridge the gap between AI research and clinical MRI application.

