Antimicrobial peptide antibiotics inhibit aerobic denitrification via affecting electron transportation and remolding carbon metabolism
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Updated: Sep 28, 2025

Antimicrobial Peptides Produced by Selective Pressure Incorporation of Non-canonical Amino Acids
Published on: May 4, 2018
Na Wang1, Jie Gao1, Qiuying Wang1
1CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China.
Abstract:
The harmful effects of antibiotics on biological denitrification have attracted widespread attention due to their excessive usage. Polymyxin B (PMB) as the typical antimicrobial peptides having been regarded as the "last hope" for treatment of multidrug-resistance bacteria, has also been detected in wastewater. However, little is known about the influence of PMB on aerobic denitrification. In this study, the impact of PMB on aerobic denitrification performance was investigated. Results showed 0.50 mg/L PMB decreased nitrate removal efficiency from 97.4% to 85.3%, and drove denitrifiers to transform more nitrate to biomass instead of producing gas-N. The live/dead staining method showed PMB damaged bacterial membrane. Transcriptome analysis further indicated the key enzymes participating in denitrification and aerobic respiratory chains were suppressed by PMB. To resist the PMB stress, denitrifiers formed thicker biofilm to protect cells from PMB damaging and thus remodeling the central carbon metabolism. Further investigation revealed denitrifiers have different preference on various carbon sources when PMB is present. Subsequently, the underlying mechanism of the distinctive carbon sources preference was explored by the combination of transcriptome and metabolism analysis. Overall, our data suggested denitrifiers have distinctive carbon sources preference under PMB treatment conditions, reminding us that carbon source selection should be cautious in practical applications.
Insights
Polymyxin B (PMB) harms aerobic denitrification, reducing nitrate removal and altering microbial metabolism. Denitrifiers adapt by forming biofilms and preferring specific carbon sources under PMB stress.
Area of Science:
- Environmental Microbiology
- Wastewater Treatment Technologies
- Antimicrobial Peptide Toxicology
Background:
- Antibiotics in wastewater can disrupt crucial microbial processes like denitrification.
- Polymyxin B (PMB), a last-resort antibiotic, is increasingly detected in environmental samples.
- The impact of PMB on aerobic denitrification remains poorly understood.
Purpose of the Study:
- To investigate the effects of Polymyxin B on aerobic denitrification performance.
- To elucidate the mechanisms by which PMB influences denitrifying bacteria.
- To understand how PMB affects microbial metabolism and carbon source utilization.
Main Methods:
- Aerobic denitrification experiments with varying PMB concentrations.
- Live/dead cell staining to assess bacterial viability.
- Transcriptome analysis to identify gene expression changes.
- Metabolomics to analyze metabolic pathways and carbon source preference.
Main Results:
- PMB (0.50 mg/L) significantly reduced nitrate removal efficiency from 97.4% to 85.3%.
- PMB shifted denitrification from N2 gas production to biomass conversion and damaged bacterial membranes.
- Key enzymes in denitrification and respiration were suppressed; denitrifiers formed thicker biofilms.
- PMB exposure induced distinct carbon source preferences in denitrifiers.
Conclusions:
- Polymyxin B impairs aerobic denitrification and alters microbial community functions.
- Denitrifying bacteria develop resistance strategies, including biofilm formation and metabolic remodeling.
- Careful consideration of carbon source selection is crucial for wastewater treatment under PMB contamination.
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