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Published on: December 1, 2020
ELIXIR biovalidator for semantic validation of life science metadata
Isuru Liyanage1, Tony Burdett1, Bert Droesbeke2,3
1European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton CB10 1SD, UK.
Summary:
To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents.
Availability And Implementation:
Source code: https://github.com/elixir-europe/biovalidator, Release: v1.9.1, License: Apache License 2.0, Deployed at: https://www.ebi.ac.uk/biosamples/schema/validator/validate.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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