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Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues
Published on: July 14, 2015
Zihang Meng1, Lopamudra Mukherjee2, Yichao Wu3
1University of Wisconsin-Madison.
We present a novel framework for training deep neural networks using non-decomposable performance measures like AUC and F-measure. Our method efficiently solves linear programs on GPUs, improving computational behavior and performance.
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