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Related Concept Videos

Next-generation Sequencing03:00

Next-generation Sequencing

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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
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Related Experiment Video

Updated: Sep 27, 2025

A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes
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High-Throughput B Cell Epitope Determination by Next-Generation Sequencing.

Lauren M Walker1,2, Andrea R Shiakolas1,2, Rohit Venkat1

  • 1Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, United States.

Frontiers in Immunology
|April 11, 2022
PubMed
Summary
This summary is machine-generated.

A new sequencing technology, LIBRA-seq with epitope mapping, efficiently identifies rare human monoclonal antibodies targeting specific epitopes. This method aids in discovering therapeutic antibodies against infectious diseases like HIV.

Keywords:
HIVepitopemonoclonal antibodynext generation sequencing (NGS)single cell

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Area of Science:

  • Immunology
  • Molecular Biology
  • Biotechnology

Background:

  • Monoclonal antibodies are crucial for combating infectious diseases.
  • Identifying antibodies with specific therapeutic epitopes is challenging with current methods.
  • Existing techniques often require extensive post-production characterization for epitope information.

Purpose of the Study:

  • To introduce LIBRA-seq with epitope mapping, a novel next-generation sequencing technology.
  • To enable high-throughput, residue-level epitope determination for single B cells simultaneously.
  • To accelerate the discovery of therapeutic antibodies targeting specific antigen sites.

Main Methods:

  • Development of LIBRA-seq with epitope mapping technology.
  • Utilizing an antigen panel of point mutants (HIV-1 Env glycoprotein).
  • Simultaneous epitope determination for thousands of single B cells.

Main Results:

  • Successfully identified and confirmed antibodies targeting multiple vulnerability sites on HIV-1 Env.
  • Demonstrated residue-level epitope mapping capabilities.
  • Validated the efficiency of LIBRA-seq for high-throughput antibody discovery.

Conclusions:

  • LIBRA-seq with epitope mapping is an efficient tool for identifying antibodies against specific epitopes.
  • This technology significantly advances the discovery of therapeutic monoclonal antibodies.
  • Enables rapid characterization of antibody-antigen interactions at a granular level.