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Published on: September 11, 2017
Recruitment of Mobile Genetic Elements for Diverse Cellular Functions in Prokaryotes
Sean Benler1, Eugene V Koonin1
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States.
Abstract:
Prokaryotic genomes are replete with mobile genetic elements (MGE) that span a continuum of replication autonomy. On numerous occasions during microbial evolution, diverse MGE lose their autonomy altogether but, rather than being quickly purged from the host genome, assume a new function that benefits the host, rendering the immobilized MGE subject to purifying selection, and resulting in its vertical inheritance. This mini-review highlights the diversity of the repurposed (exapted) MGE as well as the plethora of cellular functions that they perform. The principal contribution of the exaptation of MGE and their components is to the prokaryotic functional systems involved in biological conflicts, and in particular, defense against viruses and other MGE. This evolutionary entanglement between MGE and defense systems appears to stem both from mechanistic similarities and from similar evolutionary predicaments whereby both MGEs and defense systems tend to incur fitness costs to the hosts and thereby evolve mechanisms for survival including horizontal mobility, causing host addiction, and exaptation for functions beneficial to the host. The examples discussed demonstrate that the identity of an MGE, overall mobility and relationship with the host cell (mutualistic, symbiotic, commensal, or parasitic) are all factors that affect exaptation.
Insights
Mobile genetic elements (MGE) in prokaryotes can lose autonomy but gain new host-beneficial functions through exaptation. This evolutionary process primarily enhances microbial defense systems against viruses and other MGE.
Area of Science:
- Microbial evolution
- Genomics
- Molecular biology
Background:
- Prokaryotic genomes contain numerous mobile genetic elements (MGE) with varying replication autonomy.
- MGE can lose their independence during evolution but are retained if they acquire beneficial functions for the host.
- This process, known as exaptation, leads to the vertical inheritance of formerly mobile elements.
Purpose of the Study:
- To review the diversity of exapted MGE in prokaryotes.
- To highlight the range of cellular functions acquired by these repurposed elements.
- To explore the evolutionary entanglement of MGE and host defense systems.
Main Methods:
- Literature review and synthesis of existing research on MGE exaptation in prokaryotes.
- Analysis of examples illustrating the functional diversification of MGE.
- Discussion of evolutionary factors influencing MGE exaptation.
Main Results:
- Exapted MGE perform diverse cellular functions, significantly contributing to prokaryotic defense against viruses and other MGE.
- Evolutionary similarities and shared challenges (e.g., host fitness costs) drive the entanglement of MGE and defense systems.
- Factors such as MGE identity, mobility, and host relationship influence the exaptation process.
Conclusions:
- Exaptation is a key evolutionary mechanism shaping prokaryotic genomes and functional systems.
- The integration of MGE into host defense mechanisms highlights a co-evolutionary dynamic.
- Understanding MGE exaptation provides insights into microbial adaptation and genome evolution.
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