Photochemical modifications for DNA/RNA oligonucleotides
Amirrasoul Tavakoli1, Jung-Hyun Min1
1Department of Chemistry & Biochemistry, Baylor University Waco TX 76706 USA JungHyun_Min@baylor.edu +1-254-710-2095.
RSC Advances
|April 15, 2022
Summary
Photochemistry enables precise control over DNA and RNA functions using light. This review details photoconvertible groups for altering nucleic acid structure and applications in biological research.
Area of Science:
- Biochemistry and Molecular Biology
- Chemical Biology
- Photochemistry
Background:
- Light-triggered chemical reactions offer precise control over biological processes.
- Photochemical methods are orthogonal to cellular events and allow spatial and temporal control.
- Modulating DNA/RNA structure and function with light is a rapidly developing field.
Purpose of the Study:
- To review photoconvertible groups used in oligonucleotides.
- To summarize their reaction characteristics and impact on DNA/RNA.
- To highlight their diverse biological applications.
Main Methods:
- Literature review of photochemical groups in oligonucleotides.
- Analysis of reaction mechanisms (cleavage, crosslinking, isomerization, cyclization).
- Assessment of effects on nucleic acid thermal stability and structure.
Main Results:
- Compilation of various photoconvertible groups for oligonucleotide modification.
- Characterization of light-induced irreversible and reversible reactions.
- Summary of impacts on oligonucleotide biophysical properties.
Conclusions:
- Photoconvertible groups offer versatile tools for controlling nucleic acid behavior.
- These modifications enable novel applications in chemical biology and molecular research.
- Further development promises advanced light-controlled biological systems.
Related Concept Videos
Overview of DNA Repair
31.8K
In order to be passed through generations, genomic DNA must be undamaged and error-free. However, every day, DNA in a cell undergoes several thousand to a million damaging events by natural causes and external factors. Ionizing radiation such as UV rays, free radicals produced during cellular respiration, and hydrolytic damage from metabolic reactions can alter the structure of DNA. Damages caused include single-base alteration, base dimerization, chain breaks, and cross-linkage.
Chemically...
Chemically...
31.8K
Spontaneous and Induced Mutations
258
Spontaneous mutations arise infrequently during DNA replication due to errors in the process. A key factor behind these errors is tautomeric shifts in nitrogenous bases, where bases transition from keto to enol forms or amino to imino forms. This shift can alter base-pairing rules, leading to mutations. Additionally, reactive oxygen species (ROS) arising from aerobic metabolism can damage DNA, resulting in depurination (loss of a purine base) or depyrimidination (loss of a pyrimidine base).
258
Transfer RNA Synthesis
12.3K
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
12.3K
Nucleotide Excision Repair
37.6K
Overview
37.6K
Maxam-Gilbert Sequencing
11.6K
In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
Challenges of the Maxam-Gilbert Method
The...
Challenges of the Maxam-Gilbert Method
The...
11.6K
Proofreading
55.8K
Overview
55.8K


