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Quantitative Polymerase Chain Reaction-based Analyses of Murine Intestinal Microbiota After Oral Antibiotic Treatment
Published on: November 17, 2018
Changes to Gut Microbiota Following Systemic Antibiotic Administration in Infants
Yoowon Kwon1, Young-Sun Cho2, Yoo-Mi Lee2
1Department of Pediatrics, Chungnam National University Sejong Hospital, Sejong 30035, Korea.
Insights
Systemic antibiotics in early infancy alter the gut microbiome, increasing some bacteria like Escherichia/Shigella and Bifidobacterium while decreasing Bacteroides. This gut dysbiosis persists even one month after treatment, impacting infant health.
Area of Science:
- Microbiology
- Pediatric Medicine
- Gastroenterology
Background:
- Long-term antibiotic use is linked to systemic diseases like obesity, allergy, and depression, often due to gut microbiome imbalance.
- The impact of early-life antibiotic exposure on infant gut microbiome development is not well understood.
Purpose of the Study:
- To investigate the gut microbiome composition in infants following systemic antibiotic treatment.
- To assess alterations in bacterial abundance and diversity in the infant gut microbiome after antibiotic exposure.
Main Methods:
- Fecal samples were collected from 20 infants (under 3 months) who received antibiotics for at least 3 days, 4 weeks post-treatment.
- 34 age-matched healthy infants without antibiotic exposure served as controls.
- 16S rRNA gene sequencing was used to analyze relative bacterial abundance, alpha, and beta diversity.
Main Results:
- Infants treated with antibiotics showed increased relative abundance of Escherichia/Shigella and Bifidobacterium.
- A decreased relative abundance of Bacteroides was observed in the antibiotic-treated group.
- The gut microbiome in the antibiotic-treated group exhibited significantly lower alpha diversity compared to controls.
Conclusions:
- Systemic antibiotic administration in early infancy demonstrably affects gut microbiome composition.
- These alterations in the infant gut microbiome can persist for at least one month post-antibiotic treatment.
- Further long-term studies are necessary to fully understand the lasting consequences of early-life antibiotic exposure on infant gut health and systemic disease risk.
Abstract:
Long-term antibiotic use can have consequences on systemic diseases, such as obesity, allergy, and depression, implicating the causal role of gut microbiome imbalance. However, the evaluation of the effect of antibiotics in early infancy on alterations to the gut microbiome remains poorly understood. This study aimed to evaluate the gut microbiome state in infancy following systemic antibiotic treatment. Twenty infants under 3 months of age who had received antibiotics for at least 3 days were enrolled, and their fecal samples were collected 4 weeks after antibiotic administration finished. Thirty-four age-matched healthy controls without prior exposure to antibiotics were also assessed. The relative bacterial abundance in feces was obtained via sequencing of 16 S rRNA genes, and alpha and beta diversities were evaluated. At the genus level, the relative abundance of Escherichia/Shigella and Bifidobacterium increased (p = 0.03 and p = 0.017, respectively) but that of Bacteroides decreased (p = 0.02) in the antibiotic treatment group. The microbiome of the antibiotic treatment group exhibited an alpha diversity lower than that of the control group. Thus, systemic antibiotic administration in early infancy affects the gut microbiome composition even after a month has passed; long-term studies are needed to further evaluate this.
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