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Updated: Sep 26, 2025

Author Spotlight: Decoding DNA Repair by Extrachromosomal NHEJ Assay and HR Assays
Published on: February 2, 2024
hMSH5 Regulates NHEJ and Averts Excessive Nucleotide Alterations at Repair Joints
Aneesa T Al-Soodani1, Xiling Wu1, Nicole C Kelp1
1School of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Abstract:
Inappropriate repair of DNA double-strand breaks (DSBs) leads to genomic instability, cell death, or malignant transformation. Cells minimize these detrimental effects by selectively activating suitable DSB repair pathways in accordance with their underlying cellular context. Here, we report that hMSH5 down-regulates NHEJ and restricts the extent of DSB end processing before rejoining, thereby reducing "excessive" deletions and insertions at repair joints. RNAi-mediated knockdown of hMSH5 led to large nucleotide deletions and longer insertions at the repair joints, while at the same time reducing the average length of microhomology (MH) at repair joints. Conversely, hMSH5 overexpression reduced end-joining activity and increased RPA foci formation (i.e., more stable ssDNA at DSB ends). Furthermore, silencing of hMSH5 delayed 53BP1 chromatin spreading, leading to increased end resection at DSB ends.
Insights
Human MSH5 (hMSH5) protein regulates DNA double-strand break (DSB) repair by limiting excessive deletions and insertions. Down-regulating hMSH5 promotes genomic instability through altered DSB repair pathways.
Area of Science:
- Genetics
- Molecular Biology
- Cell Biology
Background:
- DNA double-strand breaks (DSBs) are critical DNA lesions. Inappropriate repair of DSBs can lead to genomic instability, cell death, or cancer.
- Cells employ various DNA repair pathways, such as non-homologous end joining (NHEJ), to maintain genomic integrity.
Purpose of the Study:
- To investigate the role of human MSH5 (hMSH5) in regulating DNA double-strand break repair pathways.
- To elucidate how hMSH5 influences the fidelity of DSB repair, specifically concerning deletions and insertions at repair junctions.
Main Methods:
- RNA interference (RNAi)-mediated knockdown of hMSH5.
- Overexpression of hMSH5.
- Analysis of nucleotide deletions and insertions at DSB repair joints.
- Assessment of microhomology (MH) length at repair junctions.
- Measurement of RPA foci formation as an indicator of single-stranded DNA (ssDNA) presence.
- Evaluation of 53BP1 chromatin spreading to assess DSB end resection.
Main Results:
- hMSH5 down-regulates non-homologous end joining (NHEJ) and restricts DSB end processing.
- Knockdown of hMSH5 resulted in larger nucleotide deletions and insertions, with reduced microhomology (MH) at repair joints.
- hMSH5 overexpression decreased end-joining activity and increased RPA foci, indicating more stable ssDNA.
- Silencing hMSH5 delayed 53BP1 chromatin spreading, correlating with increased DSB end resection.
Conclusions:
- hMSH5 plays a crucial role in maintaining genomic stability by limiting excessive DNA alterations during DSB repair.
- hMSH5 acts as a negative regulator of NHEJ and modulates the extent of DSB end processing, thereby ensuring accurate repair.
- Dysregulation of hMSH5 can contribute to genomic instability by promoting aberrant repair outcomes.
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