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Updated: Sep 25, 2025

Antimicrobial Peptides Produced by Selective Pressure Incorporation of Non-canonical Amino Acids
Published on: May 4, 2018
S51 Family Peptidases Provide Resistance to Peptidyl-Nucleotide Antibiotic McC
Eldar Yagmurov1,2, Konstantin Gilep1,2, Marina Serebryakova2,3
1Center Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Moscow, Russia.
Abstract:
Microcin C (McC)-like compounds are natural Trojan horse peptide-nucleotide antibiotics produced by diverse bacteria. The ribosomally synthesized peptide parts of these antibiotics are responsible for their facilitated transport into susceptible cells. Once inside the cell, the peptide part is degraded, releasing the toxic payload, an isoaspartyl-nucleotide that inhibits aspartyl-tRNA synthetase, an enzyme essential for protein synthesis. Bacteria that produce microcin C-like compounds have evolved multiple ways to avoid self-intoxication. Here, we describe a new strategy through the action of S51 family peptidases, which we name MccG. MccG cleaves the toxic isoaspartyl-nucleotide, rendering it inactive. While some MccG homologs are encoded by gene clusters responsible for biosynthesis of McC-like compounds, most are encoded by standalone genes whose products may provide a basal level of resistance to peptide-nucleotide antibiotics in phylogenetically distant bacteria. IMPORTANCE Here, we identified a natural substrate for a major phylogenetic clade of poorly characterized S51 family proteases from bacteria. We show that these proteins can contribute to a basal level of resistance to an important class of natural antibiotics.
Insights
Bacteria use S51 family peptidases, named MccG, to inactivate toxic microcin C-like antibiotics. This discovery reveals a new bacterial defense mechanism against peptide-nucleotide antibiotics, offering insights into microbial resistance strategies.
Area of Science:
- Microbiology
- Biochemistry
- Molecular Biology
Background:
- Microcin C (McC)-like compounds are peptide-nucleotide antibiotics produced by bacteria.
- These antibiotics act as Trojan horses, entering susceptible cells and inhibiting essential protein synthesis by targeting aspartyl-tRNA synthetase.
- Bacteria producing these compounds possess resistance mechanisms to prevent self-intoxication.
Purpose of the Study:
- To identify novel mechanisms of bacterial resistance against microcin C-like compounds.
- To characterize the function of S51 family peptidases in the context of microcin C-like antibiotic resistance.
- To investigate the role of these peptidases in providing basal resistance across diverse bacterial species.
Main Methods:
- Identification and characterization of S51 family peptidases, termed MccG.
- Analysis of MccG's enzymatic activity on toxic isoaspartyl-nucleotide payloads.
- Genomic analysis to determine the distribution of MccG homologs in relation to microcin C-like compound biosynthesis gene clusters and as standalone genes.
Main Results:
- A new class of bacterial enzymes, MccG peptidases, was identified.
- MccG enzymes effectively cleave and inactivate the toxic isoaspartyl-nucleotide payload of microcin C-like antibiotics.
- MccG homologs are found both within microcin C-like compound biosynthesis gene clusters and as standalone genes in various bacteria, suggesting broad protective roles.
Conclusions:
- MccG peptidases represent a novel defense strategy employed by bacteria against microcin C-like antibiotics.
- These enzymes detoxify the antibiotic payload, preventing inhibition of aspartyl-tRNA synthetase.
- The widespread presence of MccG, particularly as standalone genes, indicates a significant contribution to basal resistance against peptide-nucleotide antibiotics in diverse bacterial populations.
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