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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Long noncoding RNA BACE1-antisense transcript plays a critical role in Parkinson's disease via microRNA-214-3p/Cell
Lina Li1, Hongjuan Wang2, Huicang Li1
1First Department of Neurology, Baoji Hospital of Traditional Chinese Medicine, Baoji, Shaanxi, China.
Abstract:
This study aimed to analyze the function and latent mechanism of long noncoding RNA BACE1-antisense transcript (lncRNA BACE1-AS) in MPP+-induced SH-SY5Y cells. SH-SY5Y cells were cultivated in 1 mM MPP+ for 24 h to establish Parkinson's disease (PD) model in vitro. TargetScan and luciferase reporter assay were conducted to predict and verify the interaction between microRNA (miR)-214-3p and CDIP1 (Cell death-inducing p53-target protein 1). Cell viability, lactate dehydrogenase (LDH) release, and cell apoptosis were evaluated by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2 H-tetrazolium bromide (MTT), LDH, and flow cytometer. The secretion of inflammatory factors and representative biomarkers of oxidative stress, including reactive oxygen species (ROS) and superoxide dismutase (SOD) were assessed using enzyme-linked immunosorbent assay (ELISA) and specific assay kits. Results suggested that lncRNA BACE1-AS was over-expressed and miR-214-3p was under-expressed in MPP+-stimulated SH-SY5Y cells. Further analyses revealed that MPP+ inhibited cell viability; enhanced cell apoptosis, Cleaved Caspase-3 expression and Cleaved Caspase-3/GAPDH ratio; induced oxidative stress and inflammation in SH-SY5Y cells were inhibited by lncRNA BACE1-AS-siRNA transfection; and all these inhibitions were reversed by miR-214-3p inhibitor. In addition, we found that CDIP1 was directly targeted by miR-214-3p and up-regulated in MPP+-stimulated SH-SY5Y cells. Further functional assays suggested that CDIP1-plasmid reversed the effects of miR-214-3p mimic on MPP+-stimulated SH-SY5Y cells. In conclusion, lncRNA BACE1-AS regulates SH-SY5Y cell proliferation, apoptosis, inflammatory response, and oxidative stress through direct regulation of miR-214-3p/CDIP1 signaling axis, and could be a potential candidate associated with the diagnosis and treatment of PD.
Insights
Long noncoding RNA BACE1-antisense transcript (lncRNA BACE1-AS) protects against Parkinson's disease (PD) by regulating miR-214-3p/CDIP1 signaling. This mechanism impacts cell viability, apoptosis, inflammation, and oxidative stress in PD models.
Area of Science:
- Neuroscience
- Molecular Biology
- Genetics
Background:
- Parkinson's disease (PD) is a neurodegenerative disorder with complex molecular mechanisms.
- Long noncoding RNAs (lncRNAs) are increasingly recognized for their roles in disease pathogenesis.
- Understanding the function of lncRNA BACE1-antisense transcript (lncRNA BACE1-AS) in PD is crucial for therapeutic development.
Purpose of the Study:
- To investigate the role and underlying mechanism of lncRNA BACE1-AS in a cellular model of Parkinson's disease.
- To analyze the interaction between lncRNA BACE1-AS, microRNA (miR)-214-3p, and CDIP1 (Cell death-inducing p53-target protein 1) in MPP+-induced neurotoxicity.
Main Methods:
- Establishment of an in vitro Parkinson's disease model using MPP+-treated SH-SY5Y cells.
- Assessment of cell viability (MTT), apoptosis (flow cytometry), and inflammatory markers (ELISA).
- Evaluation of oxidative stress markers (ROS, SOD) and molecular interactions using luciferase reporter assays and siRNA/inhibitor transfections.
Main Results:
- MPP+ treatment induced neurotoxicity, characterized by reduced cell viability, increased apoptosis, oxidative stress, and inflammation.
- lncRNA BACE1-AS was upregulated, while miR-214-3p was downregulated in MPP+-treated cells.
- lncRNA BACE1-AS overexpression protected against MPP+-induced damage, an effect mediated through the miR-214-3p/CDIP1 axis.
Conclusions:
- lncRNA BACE1-AS plays a protective role in Parkinson's disease models by modulating the miR-214-3p/CDIP1 signaling pathway.
- This pathway influences crucial cellular processes including proliferation, apoptosis, inflammation, and oxidative stress.
- lncRNA BACE1-AS represents a potential therapeutic target for Parkinson's disease diagnosis and treatment.
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