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Updated: Sep 25, 2025
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Published on: April 25, 2025
Identification of novel and potent PROTACs targeting FAK for non-small cell lung cancer: Design, synthesis, and
Yin Sun1, Ruifeng Wang2, Yu Sun1
1Key Laboratory of Structure-Based Drug Design and Discovery, Ministry of Education, School of Pharmaceutical Engineering, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe District, Shenyang, 110016, PR China.
Abstract:
The intracellular non-receptor tyrosine protein kinase Focal adhesion kinase (FAK) is a key signalling regulator, which mediates tumor survival, invasion, metastasis, and angiogenesis through its kinase catalytic functions and non-kinase scaffolding functions. Previous efforts have clarified that it is crucial to address both FAK kinase and scaffolding functions instead of just inhibiting FAK kinase activity because it may be insufficient to completely block FAK signaling. Proteolysis targeting chimera (PROTAC) technology is a method of targeting a specific protein and inducing its degradation in the cell, which can simultaneously eliminate both kinase-dependent enzymatic functions and scaffolding functions. In current study, we designed and synthesized a series of novel FAK PROTACs and the optimal PROTAC B5 exhibited potent FAK affinity with an IC50 value of 14.9 nM. Furthermore, in A549 cells, PROTAC B5 presented strong FAK degradation activity (86.4% degradation @ 10 nM), powerful antiproliferative activity (IC50 = 0.14 ± 0.01 μM) and inhibited cell migration and invasion in a concentration-dependent manner. Additionally, the in vitro preliminary drug-like properties evaluation of PROTAC B5 showed outstanding plasma stability and moderate membrane permeability. Together, current results provided a promising FAK PROTAC B5 as lead compound for cancer-related drug discovery and FAK-degradation functions exploration in biological systems.
Insights
Novel PROTACs targeting Focal Adhesion Kinase (FAK) effectively degrade the protein, inhibiting cancer cell growth and migration. PROTAC B5 shows potent anti-cancer activity and promising drug-like properties for further development.
Area of Science:
- Biochemistry
- Molecular Biology
- Oncology
Background:
- Focal Adhesion Kinase (FAK) is a non-receptor tyrosine kinase crucial for tumor progression, mediating survival, invasion, metastasis, and angiogenesis.
- Inhibiting FAK kinase activity alone is insufficient; both kinase and scaffolding functions must be addressed for complete signaling blockade.
- Proteolysis Targeting Chimera (PROTAC) technology offers a method to induce protein degradation, simultaneously eliminating both enzymatic and scaffolding functions.
Purpose of the Study:
- To design and synthesize novel FAK PROTACs to degrade FAK protein.
- To evaluate the efficacy of FAK PROTACs in inhibiting cancer cell proliferation, migration, and invasion.
- To assess the preliminary drug-like properties of the lead FAK PROTAC compound.
Main Methods:
- Design and synthesis of a series of FAK PROTACs.
- Biochemical assays to determine FAK affinity (IC50).
- Cell-based assays to measure FAK degradation, antiproliferative activity, and inhibition of cell migration/invasion in A549 cells.
- In vitro evaluation of plasma stability and membrane permeability.
Main Results:
- The optimal PROTAC, B5, demonstrated potent FAK affinity with an IC50 of 14.9 nM.
- PROTAC B5 achieved significant FAK degradation (86.4% at 10 nM) in A549 cells.
- PROTAC B5 exhibited potent antiproliferative activity (IC50 = 0.14 ± 0.01 μM) and inhibited cell migration and invasion.
- Preliminary in vitro studies indicated outstanding plasma stability and moderate membrane permeability for PROTAC B5.
Conclusions:
- FAK PROTAC B5 is a promising lead compound for cancer drug discovery.
- This study highlights the potential of PROTAC technology for targeting FAK's dual functions.
- Further exploration of FAK-degradation functions using PROTACs is warranted for cancer therapy development.
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