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Updated: Sep 24, 2025

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Complete Genome Sequence of Stenotrophomonas maltophilia Siphophage Siara
John Marmion1, Nathaniel Tate1, James Clark1,2
1Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas, USA.
Abstract:
Stenotrophomonas maltophilia is associated with an increasing incidence of nosocomial infections. Here, we describe the isolation and genome annotation of S. maltophilia siphophage Siara. Its 61,427-bp genome is currently related only to one phage in the NCBI database, namely, S. maltophilia phage Salva, and is not related to any prophages.
Insights
Researchers isolated and sequenced Stenotrophomonas maltophilia siphophage Siara. Its genome is unique, showing limited relation to other known phages, offering new insights into S. maltophilia.
Area of Science:
- Microbiology
- Virology
- Genomics
Background:
- Stenotrophomonas maltophilia is a growing cause of hospital-acquired infections.
- Bacteriophages, viruses that infect bacteria, are potential tools for combating bacterial infections.
Purpose of the Study:
- To isolate and characterize a novel bacteriophage, S. maltophilia siphophage Siara, infecting S. maltophilia.
- To perform whole-genome sequencing and annotation of the isolated phage.
Main Methods:
- Isolation of siphophage Siara from a relevant source.
- Whole-genome sequencing using next-generation sequencing technologies.
- Bioinformatic analysis for genome annotation and comparison.
Main Results:
- Successful isolation and characterization of S. maltophilia siphophage Siara.
- Determination of the complete genome sequence (61,427 bp).
- Comparative genomic analysis revealed Siara is closely related only to S. maltophilia phage Salva and not to any prophages.
Conclusions:
- Siphophage Siara represents a novel phage with a unique genomic profile.
- The findings contribute to understanding the diversity of S. maltophilia phages.
- This research lays the groundwork for potential phage-based therapeutic strategies against S. maltophilia infections.
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